Plasmid NZ_CP065769.1

Sequence

Nucleotide Information

Accession NZ_CP065769.1
Description Enterococcus faecium strain 17-508 plasmid p17-508_2, complete sequence
Source refseq
Topology circular
Length 9392 bp
GC Content 0.35 %
Created at NCBI May 30, 2021



Assembly

Genome Data Information

Accession GCF_018517045.1
Assembly Coverage 250


Biosample

Curated Collection Information
Accession 16988094

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 49.8811N;2.2726W
Original Query Type coordinates
Coordinates (Lat/Lon) 49.88/-2.27
Address Guernsey

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Enterococcus faecium
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity



  • Sequence
    • Accession: CP066214.1
    • Description: Enterococcus faecium strain 18-201 plasmid p18-201_2, complete sequence
    • Source: insd
    • Created at NCBI: May 26, 2021

  • Host Taxonomy
    Assigned Host: Enterococcus faecium (1352)
  • Biosample
    Accession: 16988097
  • GEOGRAPHICAL INFORMATION
    • Original Query: 47.2125N;1.5527W
    • Original Query Type: coordinates
    • Address: Allée de la Maison Rouge, Madeleine, Madeleine - Champ de Mars, Centre Ville, Nantes, Loire-Atlantique, Pays de la Loire, Metropolitan France, 44007, France
    • Coordinates (Lat/Lon): 47.21/-1.55
  • ECOSYSTEM
    • Original Query: Homo sapiens,Digestive
    • Classification: gastrointestinal_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Enterococcus faecium
    • DOID/SYMP:
      • Bacterial infectious disease (DOID:104 )
        • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
        • Has_material_basis_in: ['bacteria']

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2