Plasmid NZ_CP065448.1

Sequence

Nucleotide Information

Accession NZ_CP065448.1
Description Klebsiella pneumoniae strain Ocean Ranger plasmid pOceanRanger_04
Source refseq
Topology linear
Length 43961 bp
GC Content 0.52 %
Created at NCBI Dec. 13, 2020



Assembly

Genome Data Information

Accession GCF_015992425.1
Assembly Coverage 98


Biosample

Curated Collection Information
Accession 16872509

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Taiwan
Original Query Type name
Coordinates (Lat/Lon) 23.60/120.84
Address Taiwan

ECOSYSTEM
Original Query Homo sapiens,Taichung Veterans General Hospital
Classification anthropogenic,hospital,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP065448.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgiAAC(6')-Ib-cr6copy
amrfinderplusarr-3copy
amrfinderplusaac(6')-Ib-cr5copy
amrfinderplusdfrA27copy
amrfinderplussul1copy
amrfinderplusaadA16copy
amrfinderplusqacEdelta1copy
PGAGIS6-like element IS26 family transposasecopy
PGAGintI1copy
PGAGfluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 67 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000152__NZ_CP011646_00085IncN2409924974plus90.1949901142
relaxaseNC_015872_00034MOBF3825541470plus99.53410002037
mate-pair-formationNC_015872_00005MPF_T1286813752minus89.8311001.79e-162507
mate-pair-formationNC_015872_00006MPF_T1376614458minus91.3421006.08e-133419
mate-pair-formationNC_015872_00007MPF_T1481515714minus99.667873.17e-176549
mate-pair-formationNC_015872_00010MPF_T1671519285minus99.88310001798
mate-pair-formationNC_015872_00011MPF_T1928919603minus1001003e-64216
mate-pair-formationNC_015872_00033MPF_T3671838247plus91.9611000954
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 8 of 8 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2