Plasmid NZ_CP065344.1

Sequence

Nucleotide Information

Accession NZ_CP065344.1
Description Klebsiella pneumoniae strain ZG2017CW4-4-1-2 plasmid unnamed1, complete sequence
Source refseq
Topology circular
Length 75824 bp
GC Content 0.53 %
Created at NCBI Dec. 8, 2020



Assembly

Genome Data Information

Accession GCF_015775135.1
Assembly Coverage 25


Biosample

Curated Collection Information

Accession 16951198

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Sichuan
Original Query Type name
Coordinates (Lat/Lon) 30.50/102.50
Address China,Sichuan

ECOSYSTEM
Original Query pure culture,river
Classification aquatic,cell_culture,freshwater,river
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample




Plasmid Visualization


SourceElement Name Display Sequence Favorite
amrfinderplusaph(3'')-Ibcopy
amrfinderplusfloRcopy
amrfinderplusdfrA27copy
amrfinderpluscatA2copy
rgimphAcopy
rgicatII from Escherichia coli K-12copy
rgiAAC(6')-Ib-cr6copy
rgiQnrB2copy
rgiQnrB2copy
rgiMrxcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 86 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTNZ_CP013834MOBF77448001minus86.6411006.81e-74283
replicon000195__NC_013728_00014IncQ195979plus10010001635
replicon000204__CP008701_00115IncR1897919874minus99.44210001626
repliconCP033468_00001rep_cluster_21833003530862minus82.289960715
replicon000129__CP018340IncFII3089731131plus1001001.6e-119435
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 5 of 5 entries