Plasmid NZ_CP065344.1
Sequence
Nucleotide Information
Accession | NZ_CP065344.1 |
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Description | Klebsiella pneumoniae strain ZG2017CW4-4-1-2 plasmid unnamed1, complete sequence |
Source | refseq |
Topology | circular |
Length | 75824 bp |
GC Content | 0.53 % |
Created at NCBI | Dec. 8, 2020 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Klebsiella pneumoniae (573) |
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Lineage
Superkingdom | Bacteria (2) |
---|---|
Phylum | Pseudomonadota (1224) |
Class | Gammaproteobacteria (1236) |
Order | Enterobacterales (91347) |
Family | Enterobacteriaceae (543) |
Genus | Klebsiella (570) |
Species | Klebsiella_pneumoniae (573) |
Strain |
Biosample
Curated Collection Information
Accession | 16951198 |
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PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query | China,Sichuan |
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Original Query Type | name |
Coordinates (Lat/Lon) | 30.50/102.50 |
Address | China,Sichuan |
ECOSYSTEM
Original Query | pure culture,river |
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Classification | aquatic,cell_culture,freshwater,river |
Host-associated Taxon |
DISEASE
Original Query | None |
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DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
Source | Element Name | Display | Sequence | Favorite |
---|---|---|---|---|
amrfinderplus | aph(3'')-Ib | copy | ||
amrfinderplus | floR | copy | ||
amrfinderplus | dfrA27 | copy | ||
amrfinderplus | catA2 | copy | ||
rgi | mphA | copy | ||
rgi | catII from Escherichia coli K-12 | copy | ||
rgi | AAC(6')-Ib-cr6 | copy | ||
rgi | QnrB2 | copy | ||
rgi | QnrB2 | copy | ||
rgi | Mrx | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 86 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
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NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
---|---|---|---|---|---|---|---|---|---|---|
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
oriT | NZ_CP013834 | MOBF | 7744 | 8001 | minus | 86.641 | 100 | 6.81e-74 | 283 |
replicon | 000195__NC_013728_00014 | IncQ1 | 95 | 979 | plus | 100 | 100 | 0 | 1635 |
replicon | 000204__CP008701_00115 | IncR | 18979 | 19874 | minus | 99.442 | 100 | 0 | 1626 |
replicon | CP033468_00001 | rep_cluster_2183 | 30035 | 30862 | minus | 82.289 | 96 | 0 | 715 |
replicon | 000129__CP018340 | IncFII | 30897 | 31131 | plus | 100 | 100 | 1.6e-119 | 435 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 5 of 5 entries