Plasmid NZ_CP064770.1

Sequence

Nucleotide Information

Accession NZ_CP064770.1
Description Klebsiella pneumoniae subsp. pneumoniae strain HS20R14 isolate HS20R14 plasmid pHS20R14-3, complete sequence
Source refseq
Topology circular
Length 34606 bp
GC Content 0.49 %
Created at NCBI April 14, 2022



Assembly

Genome Data Information

Accession GCF_022870645.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 16770105

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 31.21N;121.44E
Original Query Type coordinates
Coordinates (Lat/Lon) 31.21/121.44
Address Shanghai Library & Institute of Scientific and Technical Information of Shanghai, 1555号, Middle Huaihai Road, Tianpinglu, Xuhui District, Shanghai, 200031, China

ECOSYSTEM
Original Query Homo sapiens,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query hepatolithiasis
DOID/SYMP
  • Hepatobiliary disease (DOID:3118 )
    • A gastrointestinal system disease that is located_in the liver and/or biliary tract.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore