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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP063882.1
Sequence
Nucleotide Information
Accession
NZ_CP063882.1
Description
Klebsiella pneumoniae strain S90-2 plasmid pS90-2.1, complete sequence
Source
refseq
Topology
circular
Length
110388 bp
GC Content
0.49 %
Created at NCBI
Jan. 18, 2021
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Klebsiella pneumoniae (573)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Klebsiella (570)
Species
Klebsiella_pneumoniae (573)
Strain
Assembly
Genome Data Information
Accession
GCF_015278095.1
Assembly Coverage
325.61
Biosample
Curated Collection Information
Accession
16539551
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
23.15N;113.27E
Original Query Type
coordinates
Coordinates (Lat/Lon)
23.15/113.27
Address
广州麓湖高尔夫球乡村俱乐部, 广园中路辅路, Jingtaikeng, Jingtai, Baiyun District, Guangzhou City, Guangdong Province, 510091, China
ECOSYSTEM
Original Query
wild chukar,feces
Classification
fecal,gastrointestinal_system,host_associated
Host-associated Taxon
Alectoris chukar (
9078
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP063884.1
NZ_CP063883.1
Similar Plasmids
based on Mash distance
NZ_LR890257.1
See Comparison
CP110603.1
See Comparison
NZ_LR890429.1
See Comparison
NZ_LR890503.1
See Comparison
NZ_LR890705.1
See Comparison
CP110593.1
See Comparison
CP110730.1
See Comparison
NZ_CP031803.1
See Comparison
NZ_CP031803.1
See Comparison
NZ_LR890429.1
See Comparison
NZ_LR890503.1
See Comparison
NZ_LR890705.1
See Comparison
NZ_LR890257.1
See Comparison
CP110603.1
See Comparison
CP110593.1
See Comparison
CP110730.1
See Comparison
NZ_LR890429.1
See Comparison
NZ_LR890503.1
See Comparison
NZ_LR890705.1
See Comparison
NZ_LR890257.1
See Comparison
NZ_LR890429.1
See Comparison
CP110603.1
See Comparison
CP110593.1
See Comparison
CP110730.1
See Comparison
NZ_CP031803.1
See Comparison
NZ_LR890429.1
See Comparison
NZ_LR890503.1
See Comparison
NZ_LR890705.1
See Comparison
NZ_LR890257.1
See Comparison
NZ_CP063882.1
See Comparison
CP110603.1
See Comparison
CP110593.1
See Comparison
CP110730.1
See Comparison
NZ_CP031803.1
See Comparison
NZ_LR890503.1
See Comparison
NZ_LR890705.1
See Comparison
NZ_LR890257.1
See Comparison
CP110603.1
See Comparison
CP110593.1
See Comparison
CP110730.1
See Comparison
NZ_CP031803.1
See Comparison
CP110603.1
See Comparison
CP110593.1
See Comparison
CP110730.1
See Comparison
NZ_LR890429.1
See Comparison
NZ_LR890503.1
See Comparison
NZ_LR890705.1
See Comparison
NZ_LR890257.1
See Comparison
NZ_CP031803.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
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NUCCORE ACC
Source
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Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore