Plasmid NZ_CP063496.1

Sequence

Nucleotide Information

Accession NZ_CP063496.1
Description Escherichia coli strain EF5-18-41 plasmid pEF5-18-41_4, complete sequence
Source refseq
Topology circular
Length 63909 bp
GC Content 0.42 %
Created at NCBI Feb. 27, 2021



Assembly

Genome Data Information

Accession GCF_016944675.1
Assembly Coverage 694


Biosample

Curated Collection Information
Accession 16387482

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Laos
Original Query Type name
Coordinates (Lat/Lon) 20.02/103.38
Address Laos

ECOSYSTEM
Original Query Gallus gallus,chicken stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP063496.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGhypothetical proteincopy
PGAGRNA-guided endonuclease TnpB family proteincopy
PGAGHok/Gef family proteincopy
PGAGProQ/FINO family proteincopy
PGAGhypothetical proteincopy
PGAGdivision plane positioning ATPase MipZcopy
PGAGhypothetical proteincopy
PGAGJ domain-containing proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 87 entries
…



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseMF175187_00027MOBP1580919612plus90.77310002239
mate-pair-formationNC_020270_00058MPF_T4083342788minus98.1610001216
mate-pair-formationNC_019039_00051MPF_T4501045777minus99.6091002.91e-172533
mate-pair-formationNC_019039_00052MPF_T4577746508minus99.591004.55e-147460
mate-pair-formationNC_020270_00063MPF_T4667749031minus99.4910001563
mate-pair-formationNC_019039_00065MPF_T5605457046minus97.8851002.92e-175545
replicon000147__CP006264_00003IncI26265963687plus99.3210001862
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 7 of 7 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2