Plasmid NZ_CP062841.1

Sequence

Nucleotide Information

Accession NZ_CP062841.1
Description Escherichia coli strain Res13-Lact-PER02-33 plasmid unnamed34, complete sequence
Source refseq
Topology circular
Length 3256 bp
GC Content 0.47 %
Created at NCBI Nov. 19, 2020



Assembly

Genome Data Information

Accession GCF_015571655.1
Assembly Coverage 1


Biosample

Curated Collection Information
Accession 16304229

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Canada,Quebec
Original Query Type name
Coordinates (Lat/Lon) 52.48/-71.83
Address Canada,Quebec

ECOSYSTEM
Original Query Sus scrofa domesticus,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP062898.1 See Comparison
NZ_CP062818.1 See Comparison
NZ_CP062835.1 See Comparison
NZ_CP062886.1 See Comparison
NZ_CP062829.1 See Comparison
NZ_CP057241.1 See Comparison
NZ_CP057232.1 See Comparison
CP099257.1 See Comparison
NZ_CP057241.1 See Comparison
NZ_CP060884.1 See Comparison
NZ_CP062898.1 See Comparison
NZ_CP062818.1 See Comparison
NZ_CP062835.1 See Comparison
NZ_CP062886.1 See Comparison
NZ_CP062829.1 See Comparison
CP099257.1 See Comparison
NZ_CP057232.1 See Comparison
NZ_CP057241.1 See Comparison
NZ_CP060884.1 See Comparison
NZ_CP062898.1 See Comparison
NZ_CP062841.1 See Comparison
NZ_CP062818.1 See Comparison
NZ_CP062835.1 See Comparison
NZ_CP062886.1 See Comparison
NZ_CP062829.1 See Comparison
NZ_CP057232.1 See Comparison
NZ_CP062898.1 See Comparison
CP099257.1 See Comparison
NZ_CP060884.1 See Comparison
NZ_CP062818.1 See Comparison
NZ_CP062835.1 See Comparison
NZ_CP062886.1 See Comparison
NZ_CP062829.1 See Comparison
CP099257.1 See Comparison
NZ_CP057241.1 See Comparison
NZ_CP057232.1 See Comparison
NZ_CP057241.1 See Comparison
NZ_CP060884.1 See Comparison
NZ_CP062898.1 See Comparison
NZ_CP062818.1 See Comparison
NZ_CP062835.1 See Comparison
NZ_CP062886.1 See Comparison
NZ_CP062829.1 See Comparison
NZ_CP057232.1 See Comparison
NZ_CP062818.1 See Comparison
CP099257.1 See Comparison
NZ_CP060884.1 See Comparison
NZ_CP062835.1 See Comparison
NZ_CP062886.1 See Comparison
NZ_CP062829.1 See Comparison
NZ_CP057241.1 See Comparison
NZ_CP062898.1 See Comparison
NZ_CP057232.1 See Comparison
NZ_CP060884.1 See Comparison
CP099257.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore