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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP061066.1
Sequence
Nucleotide Information
Accession
NZ_CP061066.1
Description
Klebsiella pneumoniae strain HKP0018 plasmid pHKP0018.4, complete sequence
Source
refseq
Topology
circular
Length
57450 bp
GC Content
0.53 %
Created at NCBI
Sept. 10, 2020
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Klebsiella pneumoniae (573)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Klebsiella (570)
Species
Klebsiella_pneumoniae (573)
Strain
Assembly
Genome Data Information
Accession
GCF_014495785.1
Assembly Coverage
85
Biosample
Curated Collection Information
Accession
15946735
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
53.4608N;9.9836E
Original Query Type
coordinates
Coordinates (Lat/Lon)
53.46/9.98
Address
Großer Schippsee, Phoenix-Viertel, Harburg, Hamburg, 21073, Germany
ECOSYSTEM
Original Query
Homo sapiens,rectal swab
Classification
gastrointestinal_system,host_associated,rectal
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
colonization
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP061070.1
NZ_CP061069.1
NZ_CP061068.1
NZ_CP061067.1
NZ_CP061065.1
NZ_CP061064.1
NZ_CP061063.1
Similar Plasmids
based on Mash distance
NZ_CP061057.1
See Comparison
NZ_CP061066.1
See Comparison
NZ_CP061057.1
See Comparison
NZ_CP061057.1
See Comparison
NZ_CP061057.1
See Comparison
NZ_CP061057.1
See Comparison
NZ_CP061057.1
See Comparison
Identical Plasmids
100% Sequence Identity
NZ_CP061057.1
Sequence
Accession
:
NZ_CP061057.1
Description
: Klebsiella pneumoniae strain HKP0067 plasmid pHKP0067.4, complete sequence
Source
: refseq
Created at NCBI
: Sept. 10, 2020
Host Taxonomy
Assigned Host
:
Klebsiella pneumoniae (573)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Klebsiella (570)
Species
:
Klebsiella_pneumoniae (573)
Strain
:
Biosample
Accession
:
15946737
GEOGRAPHICAL INFORMATION
Original Query
: 53.4608N;9.9836E
Original Query Type
: coordinates
Address
: Großer Schippsee, Phoenix-Viertel, Harburg, Hamburg, 21073, Germany
Coordinates
(Lat/Lon): 53.46/9.98
ECOSYSTEM
Original Query
: Homo sapiens,rectal swab
Classification
: gastrointestinal_system,host_associated,rectal
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
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NUCCORE ACC
Source
Element Name
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore