Plasmid NZ_CP060957.1

Sequence

Nucleotide Information

Accession NZ_CP060957.1
Description Escherichia coli strain EC8 plasmid pEC8-5, complete sequence
Source refseq
Topology circular
Length 5165 bp
GC Content 0.47 %
Created at NCBI March 16, 2022



Assembly

Genome Data Information

Accession GCF_022559245.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 15904652

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Hangzhou
Original Query Type name
Coordinates (Lat/Lon) 30.25/120.21
Address China,Hangzhou

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP088878.1 See Comparison
NZ_CP135224.1 See Comparison
NZ_CP115346.1 See Comparison
NZ_AP022654.1 See Comparison
CP125025.1 See Comparison
CP125016.1 See Comparison
NZ_CP043409.1 See Comparison
NZ_LR890718.1 See Comparison
NZ_CP070080.1 See Comparison
NZ_CP070096.1 See Comparison
NZ_CP135224.1 See Comparison
CP088878.1 See Comparison
LR890581.1 See Comparison
CP125025.1 See Comparison
NZ_CP115346.1 See Comparison
CP125016.1 See Comparison
CP088878.1 See Comparison
NZ_CP043409.1 See Comparison
NZ_AP022654.1 See Comparison
NZ_CP070080.1 See Comparison
LR890581.1 See Comparison
NZ_CP070096.1 See Comparison
NZ_LR890718.1 See Comparison
NZ_CP070080.1 See Comparison
NZ_CP115346.1 See Comparison
CP125025.1 See Comparison
CP125016.1 See Comparison
NZ_CP043409.1 See Comparison
NZ_AP022654.1 See Comparison
NZ_CP135224.1 See Comparison
NZ_CP070096.1 See Comparison
NZ_CP115346.1 See Comparison
NZ_LR890718.1 See Comparison
LR890581.1 See Comparison
CP088878.1 See Comparison
NZ_CP135224.1 See Comparison
NZ_CP043409.1 See Comparison
CP125025.1 See Comparison
CP125016.1 See Comparison
NZ_CP070080.1 See Comparison
NZ_AP022654.1 See Comparison
NZ_CP070096.1 See Comparison
LR890581.1 See Comparison
NZ_LR890718.1 See Comparison
NZ_LR890718.1 See Comparison
NZ_CP115346.1 See Comparison
CP125025.1 See Comparison
CP125016.1 See Comparison
NZ_CP043409.1 See Comparison
NZ_CP060957.1 See Comparison
CP088878.1 See Comparison
NZ_CP135224.1 See Comparison
NZ_AP022654.1 See Comparison
NZ_CP070080.1 See Comparison
NZ_CP070096.1 See Comparison
NZ_CP115346.1 See Comparison
CP088878.1 See Comparison
NZ_CP135224.1 See Comparison
LR890581.1 See Comparison
NZ_LR890718.1 See Comparison
NZ_CP070080.1 See Comparison
NZ_CP070096.1 See Comparison
CP125025.1 See Comparison
CP125016.1 See Comparison
NZ_CP043409.1 See Comparison
NZ_AP022654.1 See Comparison
LR890581.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore