Plasmid NZ_CP060424.1

Sequence

Nucleotide Information

Accession NZ_CP060424.1
Description Klebsiella pneumoniae strain BA2105 plasmid pIncFIA_HI1, complete sequence
Source refseq
Topology circular
Length 60800 bp
GC Content 0.51 %
Created at NCBI June 1, 2020



Assembly

Genome Data Information

Accession GCF_011742505.2
Assembly Coverage 38


Biosample

Curated Collection Information
Accession 14402336

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 12.9246N;79.1348E
Original Query Type coordinates
Coordinates (Lat/Lon) 12.92/79.13
Address Christian Medical College Hospital, Ida Scudder Road, Sathuvachari, Vellore, Vellore District, Tamil Nadu, 632004, India

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP060424.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGRepB family plasmid replication initiator proteincopy
PGAGParA family plasmid-partitioning AAA ATPasecopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGIS3 family transposasecopy
PGAGsite-specific integrasecopy
PGAGccdBcopy
PGAGccdAcopy
PGAGhypothetical proteincopy
PGAGS-4TM family putative pore-forming effectorcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 58 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_022375_00024MPF_T5257354099minus93.1241000940
replicon000759__NC_013950_00034rep_cluster_141819894plus99.31510001585
oriTNZ_CP013834MOBF5457954837minus86.6921001.89e-74285
repliconAF250878IncFIA4641546801minus98.45990682
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 4 of 4 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2