Plasmid NZ_CP060171.1

Sequence

Nucleotide Information

Accession NZ_CP060171.1
Description Salmonella enterica subsp. enterica serovar Typhimurium strain BKQZM9 plasmid pBT3, complete sequence
Source refseq
Topology circular
Length 1975 bp
GC Content 0.50 %
Created at NCBI Aug. 20, 2020



Assembly

Genome Data Information

Accession GCF_014250355.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 15796617

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 15.783678S;35.016929E
Original Query Type coordinates
Coordinates (Lat/Lon) -15.78/35.02
Address Blantyre, Southern Region, Malawi, Malawi

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query iNTS
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: CP060168.1
    • Description: Salmonella enterica subsp. enterica serovar Typhimurium strain D37712 plasmid pBT3, complete sequence
    • Source: insd
    • Created at NCBI: Aug. 19, 2020

  • Host Taxonomy
    Assigned Host: Salmonella enterica (90371)
  • Biosample
    Accession: 15795869
  • GEOGRAPHICAL INFORMATION
    • Original Query: 15.46S;35.01E
    • Original Query Type: coordinates
    • Address: Blantyre, Southern Region, Malawi, Malawi
    • Coordinates (Lat/Lon): -15.46/35.01
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: invasive non-typhoidal salmonellosis,HIV-
    • DOID/SYMP:
      • Salmonellosis (DOID:0060859 )
        • A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has symptoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment.
      • Human immunodeficiency virus infectious disease (DOID:526 )
        • A viral infectious disease that results in destruction of immune system, leading to life-threatening opportunistic infections and cancers, has_material_basis_in Human immunodeficiency virus 1 or has_material_basis_in Human immunodeficiency virus 2, which are transmitted by sexual contact, transmitted by transfer of blood, semen, vaginal fluid, pre-ejaculate, or breast milk, transmitted by congenital method, and transmitted by contaminated needles. The virus infects helper T cells (CD4+ T cells) which are directly or indirectly destroyed, macrophages, and dendritic cells. The infection has symptom diarrhea, has symptom fatigue, has symptom fever, has symptom vaginal yeast infection, has symptom headache, has symptom mouth sores, has symptom muscle aches, has symptom sore throat, and has symptom swollen lymph glands.
        • Has_material_basis_in: ['human immunodeficiency virus 1 or has_material_basis_in human immunodeficiency virus 2']

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore