Plasmid NZ_CP059310.1

Sequence

Nucleotide Information

Accession NZ_CP059310.1
Description Klebsiella pneumoniae strain Kp46596 plasmid pKp46596-2, complete sequence
Source refseq
Topology circular
Length 151753 bp
GC Content 0.51 %
Created at NCBI Aug. 3, 2020



Assembly

Genome Data Information

Accession GCF_013694405.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 15578212

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP059310.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderpluspcoAcopy
amrfinderpluspcoCcopy
amrfinderpluspcoBcopy
amrfinderplussilFcopy
amrfinderplussilCcopy
amrfinderplussilScopy
amrfinderplussilRcopy
amrfinderplussilAcopy
amrfinderplussilBcopy
amrfinderpluspcoScopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 169 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000107__CP014778_00094IncFIB11011plus90.20810001319
repliconCP017721_00179rep_cluster_21838400784834minus82.75960737
replicon000132__HG969996IncFII8486985103plus99.1491003.4600000000000003e-116424
mate-pair-formationNC_021502_00150MPF_T9747499780minus97.66210001429
mate-pair-formationNC_019155_00032MPF_F101602104445minus99.5789901844
mate-pair-formationNC_019165_00034MPF_F104448105803minus98.009990817
mate-pair-formationNC_021654_00016MPF_F108667110628minus98.1659801233
mate-pair-formationNC_019389_00080MPF_F110681111316minus97.171004.22e-136427
mate-pair-formationNC_022609_00081MPF_F111332112321minus95.7581000666
mate-pair-formationNC_014312_00128MPF_F112341112958minus97.573984.41e-120381
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 17 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2