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Plasmid NZ_CP059134.1
Sequence
Nucleotide Information
Accession
NZ_CP059134.1
Description
Escherichia coli strain Ec55 plasmid pEc55_4, complete sequence
Source
refseq
Topology
circular
Length
1459 bp
GC Content
0.51 %
Created at NCBI
July 28, 2021
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_019355495.1
Assembly Coverage
1000
Biosample
Curated Collection Information
Accession
15486685
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Ghana
Original Query Type
name
Coordinates (Lat/Lon)
8.03/-1.08
Address
Ghana
ECOSYSTEM
Original Query
Homo sapiens,Urine
Classification
host_associated,urinary_system
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
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Plasmids from same Biosample
NZ_CP059133.1
NZ_CP059132.1
NZ_CP059131.1
Similar Plasmids
based on Mash distance
OW969749.1
See Comparison
NZ_CP059134.1
See Comparison
OW969749.1
See Comparison
OW969749.1
See Comparison
OW969749.1
See Comparison
OW969749.1
See Comparison
OW969749.1
See Comparison
Identical Plasmids
100% Sequence Identity
OW969749.1
Sequence
Accession
:
OW969749.1
Description
: Klebsiella pneumoniae isolate 392 genome assembly, plasmid: P3
Source
: insd
Created at NCBI
: May 20, 2022
Host Taxonomy
Assigned Host
:
Klebsiella pneumoniae (573)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Klebsiella (570)
Species
:
Klebsiella_pneumoniae (573)
Strain
:
Biosample
Accession
:
22317005
GEOGRAPHICAL INFORMATION
Original Query
: Spain
Original Query Type
: name
Address
: Spain
Coordinates
(Lat/Lon): 39.33/-4.84
ECOSYSTEM
Original Query
: Homo sapiens,2018 (Ceuta)
Classification
: host_associated,location
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: diseased
DOID/SYMP
:
Disease
(
DOID:4
)
A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
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NUCCORE ACC
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore