Plasmid NZ_CP058792.1
Sequence
Nucleotide Information
| Accession | NZ_CP058792.1 |
|---|---|
| Description | Shigella flexneri strain STLIN_6 plasmid unnamed2, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 19857 bp |
| GC Content | 0.54 % |
| Created at NCBI | March 8, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Shigella flexneri (623) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Shigella (620) |
| Species | Shigella_flexneri (623) |
| Strain |
Biosample
Curated Collection Information
| Accession | 13925576 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 22.2N;114.2E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 22.20/114.20 |
| Address | Snoopy Rock, Chung Hom Kok, Southern District, Hong Kong Island, Hong Kong, China |
ECOSYSTEM
| Original Query | Stanley WWTPs_6 WWTPs influent |
|---|---|
| Classification | wastewater,wwtp |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | sul2 | copy | ||
| amrfinderplus | sul1 | copy | ||
| amrfinderplus | arr-3 | copy | ||
| amrfinderplus | floR | copy | ||
| amrfinderplus | blaOXA-1 | copy | ||
| rgi | AAC(6')-Ib-cr6 | copy | ||
| amrfinderplus | aac(3)-IVa | copy | ||
| amrfinderplus | aac(6')-Ib-cr5 | copy | ||
| amrfinderplus | aph(4)-Ia | copy | ||
| amrfinderplus | catB3 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 25 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| No data available in table | |||||||||
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 0 to 0 of 0 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |