Plasmid NZ_CP058685.1

Sequence

Nucleotide Information

Accession NZ_CP058685.1
Description Escherichia coli strain MBT-5 plasmid unnamed3, complete sequence
Source refseq
Topology circular
Length 34196 bp
GC Content 0.40 %
Created at NCBI Aug. 11, 2020



Assembly

Genome Data Information

Accession GCF_014058445.2
Assembly Coverage 260


Biosample

Curated Collection Information
Accession 15423745

PLASMID INFORMATION
BIOSAMPLE_pathotype STEC (stx1 ,stx2 , eae)

GEOGRAPHICAL INFORMATION
Original Query 54.19166N;10.07240E
Original Query Type coordinates
Coordinates (Lat/Lon) 54.19/10.07
Address Flachsrade, Brüggerholz, Brügge, Bordesholm, Rendsburg-Eckernförde, Schleswig-Holstein, 24582, Germany

ECOSYSTEM
Original Query ready to eat mixed salad leaves (obtained from discount store)
Classification food
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP058685.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore