Plasmid NZ_CP058622.1

Sequence

Nucleotide Information

Accession NZ_CP058622.1
Description Escherichia coli strain JS316 plasmid unnamed3, complete sequence
Source refseq
Topology circular
Length 9135 bp
GC Content 0.58 %
Created at NCBI Oct. 1, 2020



Assembly

Genome Data Information

Accession GCF_014826015.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 15455438

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 50.1239N;8.5763E
Original Query Type coordinates
Coordinates (Lat/Lon) 50.12/8.58
Address 36, Flurscheideweg, Sossenheim, West, Frankfurt, Hesse, 65936, Germany

ECOSYSTEM
Original Query Homo sapiens,Rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Infection control
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP058622.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgidfrA17copy
rgimphAcopy
rgisul1copy
rgiMrxcopy
amrfinderplusmph(A)copy
amrfinderplusqacEdelta1copy
amrfinderplusdfrA17copy
amrfinderplusaadA5copy
PGAGANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5copy
PGAGquaternary ammonium compound efflux SMR transporter QacE delta 1copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 16 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
No data available in table
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
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Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2