Plasmid NZ_CP057358.1

Sequence

Nucleotide Information

Accession NZ_CP057358.1
Description Escherichia fergusonii strain RHB28-C21 plasmid pRHB28-C21_2, complete sequence
Source refseq
Topology circular
Length 285327 bp
GC Content 0.47 %
Created at NCBI Aug. 4, 2020



Assembly

Genome Data Information

Accession GCF_013829265.1
Assembly Coverage 152.972


Biosample

Curated Collection Information
Accession 15148274

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled pig faecal samples collected from floor of farm
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP057331.1 See Comparison
NZ_CP055676.1 See Comparison
CP057760.1 See Comparison
CP057752.1 See Comparison
CP057739.1 See Comparison
CP057732.1 See Comparison
CP057726.1 See Comparison
NZ_CP057312.1 See Comparison
NZ_CP099350.1 See Comparison
CP099295.1 See Comparison
CP099295.1 See Comparison
NZ_CP055676.1 See Comparison
CP057760.1 See Comparison
CP057752.1 See Comparison
CP057739.1 See Comparison
CP057732.1 See Comparison
CP057726.1 See Comparison
NZ_CP057331.1 See Comparison
NZ_CP057358.1 See Comparison
NZ_CP057312.1 See Comparison
NZ_CP099350.1 See Comparison
CP099295.1 See Comparison
NZ_CP057331.1 See Comparison
NZ_CP057312.1 See Comparison
NZ_CP099350.1 See Comparison
NZ_CP055676.1 See Comparison
CP057760.1 See Comparison
CP057752.1 See Comparison
CP057739.1 See Comparison
CP057732.1 See Comparison
CP057726.1 See Comparison
NZ_CP055676.1 See Comparison
CP057760.1 See Comparison
CP057752.1 See Comparison
CP057739.1 See Comparison
CP057732.1 See Comparison
CP057726.1 See Comparison
NZ_CP057331.1 See Comparison
NZ_CP057312.1 See Comparison
NZ_CP099350.1 See Comparison
CP099295.1 See Comparison
NZ_CP057331.1 See Comparison
NZ_CP055676.1 See Comparison
CP057760.1 See Comparison
CP057752.1 See Comparison
CP057739.1 See Comparison
CP057732.1 See Comparison
CP057726.1 See Comparison
NZ_CP057312.1 See Comparison
NZ_CP099350.1 See Comparison
CP099295.1 See Comparison
NZ_CP055676.1 See Comparison
CP057760.1 See Comparison
CP057752.1 See Comparison
CP057739.1 See Comparison
CP057732.1 See Comparison
CP057726.1 See Comparison
NZ_CP099350.1 See Comparison
CP099295.1 See Comparison
NZ_CP057331.1 See Comparison
NZ_CP057312.1 See Comparison
NZ_CP055676.1 See Comparison
CP057760.1 See Comparison
CP057752.1 See Comparison
CP057739.1 See Comparison
CP057732.1 See Comparison
CP057726.1 See Comparison
NZ_CP057331.1 See Comparison
NZ_CP057312.1 See Comparison
NZ_CP099350.1 See Comparison
CP099295.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusqacLcopy
amrfinderpluspcoAcopy
amrfinderpluspcoCcopy
amrfinderpluspcoBcopy
amrfinderplusterDcopy
amrfinderplusterZcopy
amrfinderplusterWcopy
amrfinderplussilRcopy
amrfinderplussul3copy
amrfinderplussilFcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 310 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconBX664015IncHI2A211840plus99.52410001147
replicon000340__KU353730rep_cluster_10885648957451plus10010001779
mate-pair-formationNC_005211_00005MPF_F27583543plus1001002.33e-172533
relaxaseNC_012555_00231MOBH203913207056plus99.04610002119
mate-pair-formationNC_009838_00006MPF_F35464814plus99.7641000801
mate-pair-formationNC_005211_00012MPF_T895511633plus10010001873
mate-pair-formationNC_021845_00017MPF_F3014531653plus99.0061000990
mate-pair-formationNC_005211_00030MPF_F3179532850plus99.716990734
mate-pair-formationNC_005211_00200MPF_F197569198981minus1001000933
mate-pair-formationNC_005211_00207MPF_F207059209140plus99.85610001421
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 11 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2