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v. 2024_05_31_v2
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Antimicrobial Resistance Genes
Typing
Plasmid NZ_CP056862.1
Sequence
Nucleotide Information
Accession
NZ_CP056862.1
Description
Citrobacter sp. RHBSTW-00107 plasmid pRHBSTW-00107_2, complete sequence
Source
refseq
Topology
circular
Length
281677 bp
GC Content
0.47 %
Created at NCBI
Aug. 3, 2020
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Citrobacter sp. RHBSTW-00107 (2742635)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Citrobacter (544)
Species
Citrobacter_sp._RHBSTW-00107 (2742635)
Strain
Assembly
Genome Data Information
Accession
GCF_013794885.1
Assembly Coverage
94.8044
Biosample
Curated Collection Information
Accession
15148489
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
United Kingdom
Original Query Type
name
Coordinates (Lat/Lon)
54.70/-3.28
Address
United Kingdom
ECOSYSTEM
Original Query
culture,Freshwater sample from downstream of wastewater treatment plant
Classification
aquatic,cell_culture,freshwater
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP056864.1
NZ_CP056863.1
Similar Plasmids
based on Mash distance
NZ_CP056509.1
See Comparison
NZ_CP056509.1
See Comparison
NZ_CP056322.1
See Comparison
NZ_CP056285.1
See Comparison
NZ_CP056322.1
See Comparison
NZ_CP056285.1
See Comparison
NZ_CP056509.1
See Comparison
NZ_CP056322.1
See Comparison
NZ_CP056285.1
See Comparison
NZ_CP056862.1
See Comparison
NZ_CP056509.1
See Comparison
NZ_CP056322.1
See Comparison
NZ_CP056285.1
See Comparison
NZ_CP056509.1
See Comparison
NZ_CP056322.1
See Comparison
NZ_CP056285.1
See Comparison
NZ_CP056509.1
See Comparison
NZ_CP056322.1
See Comparison
NZ_CP056285.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore