Plasmid NZ_CP056857.1
Sequence
Nucleotide Information
| Accession | NZ_CP056857.1 |
|---|---|
| Description | Klebsiella pneumoniae strain RHBSTW-00113 plasmid pRHBSTW-00113_4, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 55736 bp |
| GC Content | 0.53 % |
| Created at NCBI | Aug. 3, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 15148492 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | United Kingdom |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 54.70/-3.28 |
| Address | United Kingdom |
ECOSYSTEM
| Original Query | culture,Freshwater sample from downstream of wastewater treatment plant |
|---|---|
| Classification | aquatic,cell_culture,freshwater |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Plasmid Visualization
Grays
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | RNA-guided endonuclease TnpB family protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | HNH endonuclease signature motif containing protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | RNA-guided endonuclease TnpB family protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | host cell division inhibitor Icd-like protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 60 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 001607__CP009878 | rep_cluster_3 | 13751 | 15250 | plus | 99.933 | 100 | 0 | 2765 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
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Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |