Plasmid NZ_CP056828.1

Sequence

Nucleotide Information

Accession NZ_CP056828.1
Description Citrobacter freundii strain RHBSTW-00135 plasmid pRHBSTW-00135_2, complete sequence
Source refseq
Topology circular
Length 295849 bp
GC Content 0.52 %
Created at NCBI Aug. 4, 2020



Assembly

Genome Data Information

Accession GCF_013791065.1
Assembly Coverage 94.7585


Biosample

Curated Collection Information
Accession 15148506

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Wastewater influent sample
Classification cell_culture,wastewater
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP056828.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGRepB family plasmid replication initiator proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGtype IV conjugative transfer system protein TraLcopy
PGAGTraE/TraK family type IV conjugative transfer system proteincopy
PGAGtype-F conjugative transfer system secretin TraKcopy
PGAGhtdOcopy
PGAGtrhBcopy
PGAGhypothetical proteincopy
PGAGhtdTcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 331 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_019360_00255MPF_F31443926plus1001003.03e-163507
mate-pair-formationNC_019360_00256MPF_F39325167plus1001000813
mate-pair-formationNC_009981_00239MPF_T930211980plus93.84110001723
mate-pair-formationNC_019360_00278MPF_F2882630331plus10010001032
mate-pair-formationNC_005211_00030MPF_F3047931531plus96.011990711
mate-pair-formationNC_015727_00490MPF_T6111862107minus87.8791001.87e-150474
mate-pair-formationNC_022344_00330MPF_T6210762808minus94.8721003.51e-146457
mate-pair-formationNC_022344_00326MPF_T6534567720minus88.0059701414
mate-pair-formationNC_022344_00321MPF_T6992571919minus89.80510001134
mate-pair-formationNC_015727_00490MPF_T237298238287minus92.1211005.19e-162507
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 19 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2