Plasmid NZ_CP056745.1

Sequence

Nucleotide Information

Accession NZ_CP056745.1
Description Enterobacter hormaechei strain RHBSTW-00220 plasmid pRHBSTW-00220_4, complete sequence
Source refseq
Topology circular
Length 4853 bp
GC Content 0.52 %
Created at NCBI Aug. 3, 2020



Assembly

Genome Data Information

Accession GCF_013743295.1
Assembly Coverage 109.837


Biosample

Curated Collection Information
Accession 15148549

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Wastewater influent sample
Classification cell_culture,wastewater
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGrelaxase/mobilization nuclease domain-containing proteincopy
PGAGMobC family plasmid mobilization relaxosome proteincopy
PGAGhypothetical proteincopy
PGAGhelix-turn-helix domain-containing proteincopy
PGAGhypothetical proteincopy
MOB-typerMOBPcopy
MOB-typerMOBPcopy
MOB-typerMOBPcopy
MOB-typerMOBPcopy
MOB-typerrep_cluster_2335copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 10 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseCP041059_00006MOBP2349minus99.138878.04e-70238
oriTKJ009324MOBP777951minus961001.21e-74285
repliconKU302809_00001rep_cluster_23358741421plus93.455900811
relaxaseNC_001848_00006MOBP345662minus91.509991.8800000000000002e-59202
relaxaseNC_011404_00002MOBP37034851minus87.371990650
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 5 of 5 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2