Plasmid NZ_CP056510.1

Sequence

Nucleotide Information

Accession	NZ_CP056510.1
Description	Citrobacter sp. RHBSTW-00446 plasmid pRHBSTW-00446_3, complete sequence
Source	refseq
Topology	circular
Length	64447 bp
GC Content	0.53 %
Created at NCBI	Sept. 30, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Citrobacter sp. RHBSTW-00446 (2742648)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Citrobacter (544)
Species	Citrobacter_sp._RHBSTW-00446 (2742648)
Strain

Assembly

Genome Data Information

Accession	GCF_013737455.1
Assembly Coverage	91.9836

Biosample

Curated Collection Information

Accession	15148616

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	United Kingdom
Original Query Type	name
Coordinates (Lat/Lon)	54.70/-3.28
Address	United Kingdom

ECOSYSTEM

Original Query	culture,Wastewater influent sample
Classification	cell_culture,wastewater
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP056323.1	See Comparison
NZ_CP056286.1	See Comparison
NZ_CP056323.1	See Comparison
NZ_CP056286.1	See Comparison
NZ_CP056323.1	See Comparison
NZ_CP056323.1	See Comparison
NZ_CP056286.1	See Comparison
NZ_CP056286.1	See Comparison
NZ_CP056323.1	See Comparison
NZ_CP056286.1	See Comparison
NZ_CP056510.1	See Comparison
NZ_CP056323.1	See Comparison
NZ_CP056286.1	See Comparison
NZ_CP056323.1	See Comparison
NZ_CP056286.1	See Comparison

Plasmid Visualization

Grays

Blues

Purples

Reds

Oranges

Greens

100

Hex

R

G

B

Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	arsA		copy
amrfinderplus	arsD		copy
amrfinderplus	arsR		copy
amrfinderplus	arsC		copy
PGAG	arsB		copy
PGAG	non-heme ferritin-like protein		copy
PGAG	IS6-like element IS26 family transposase		copy
PGAG	MFS transporter		copy
PGAG	RidA family protein		copy
PGAG	hypothetical protein		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 58 entries

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	000204__CP008701_00115	IncR	32228	33123	plus	99.442	100	0	1626
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 1 of 1 entry

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2