Plasmid NZ_CP056468.1

Sequence

Nucleotide Information

Accession NZ_CP056468.1
Description Citrobacter freundii strain RHBSTW-00486 plasmid pRHBSTW-00486_3, complete sequence
Source refseq
Topology circular
Length 4183 bp
GC Content 0.37 %
Created at NCBI Aug. 3, 2020



Assembly

Genome Data Information

Accession GCF_013748235.1
Assembly Coverage 117.292


Biosample

Curated Collection Information
Accession 15148631

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Freshwater sample from downstream of wastewater treatment plant
Classification aquatic,cell_culture,freshwater
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

OW969700.1 See Comparison
NZ_CP145169.1 See Comparison
NZ_CP145162.1 See Comparison
NZ_CP145193.1 See Comparison
NZ_CP145185.1 See Comparison
CP056480.1 See Comparison
NZ_CP056205.1 See Comparison
NZ_CP056468.1 See Comparison
NZ_CP067272.1 See Comparison
OW968398.1 See Comparison
OW968031.1 See Comparison
NZ_CP145169.1 See Comparison
NZ_CP145162.1 See Comparison
NZ_CP145193.1 See Comparison
NZ_CP145185.1 See Comparison
CP056480.1 See Comparison
OW969700.1 See Comparison
NZ_CP056205.1 See Comparison
CP056480.1 See Comparison
NZ_CP067272.1 See Comparison
OW968398.1 See Comparison
OW968031.1 See Comparison
NZ_CP145169.1 See Comparison
NZ_CP145162.1 See Comparison
NZ_CP145193.1 See Comparison
NZ_CP145185.1 See Comparison
NZ_CP056205.1 See Comparison
OW969700.1 See Comparison
OW968398.1 See Comparison
OW968031.1 See Comparison
CP056480.1 See Comparison
NZ_CP067272.1 See Comparison
NZ_CP056205.1 See Comparison
OW969700.1 See Comparison
OW968398.1 See Comparison
OW968031.1 See Comparison
NZ_CP067272.1 See Comparison
NZ_CP145169.1 See Comparison
NZ_CP145162.1 See Comparison
NZ_CP145193.1 See Comparison
NZ_CP145185.1 See Comparison
CP056480.1 See Comparison
NZ_CP145169.1 See Comparison
NZ_CP145162.1 See Comparison
NZ_CP145193.1 See Comparison
NZ_CP145185.1 See Comparison
NZ_CP067272.1 See Comparison
NZ_CP056205.1 See Comparison
OW969700.1 See Comparison
OW968398.1 See Comparison
OW968031.1 See Comparison
NZ_CP145169.1 See Comparison
CP056480.1 See Comparison
NZ_CP145162.1 See Comparison
NZ_CP145193.1 See Comparison
NZ_CP145185.1 See Comparison
OW969700.1 See Comparison
NZ_CP056205.1 See Comparison
OW968398.1 See Comparison
NZ_CP067272.1 See Comparison
OW968031.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore