Plasmid NZ_CP055884.1

Sequence

Nucleotide Information

Accession NZ_CP055884.1
Description Enterobacter sp. RHBSTW-00975 plasmid pRHBSTW-00975_2, complete sequence
Source refseq
Topology circular
Length 137954 bp
GC Content 0.52 %
Created at NCBI July 30, 2020



Assembly

Genome Data Information

Accession GCF_013615235.1
Assembly Coverage 193.801


Biosample

Curated Collection Information
Accession 15148757

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Wastewater influent sample
Classification cell_culture,wastewater
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP055884.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplushdeD-GIcopy
amrfinderplushsp20copy
amrfinderplusclpKcopy
amrfinderpluspcoScopy
amrfinderpluspsi-GIcopy
amrfinderpluspcoRcopy
amrfinderpluspcoDcopy
amrfinderplustrxLHRcopy
amrfinderplusshsPcopy
amrfinderpluspcoAcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 143 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconCP019890_00139IncFII11014plus91.81510001413
repliconCP040393_00011rep_cluster_22686494465649minus80.878951.14e-155556
repliconCP001919IncFII9540696023plus93.2041000909
mate-pair-formationNC_009425_00105MPF_F8841788716plus92992.11e-56193
mate-pair-formationNC_014107_00126MPF_F8872589303plus84.9741007.52e-108345
mate-pair-formationNC_014107_00127MPF_F8931890055plus96.7481002.42e-147461
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 6 of 6 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2