Plasmid NZ_CP055680.1

Sequence

Nucleotide Information

Accession NZ_CP055680.1
Description Escherichia fergusonii strain RHB28-C13 plasmid pRHB28-C13_6, complete sequence
Source refseq
Topology circular
Length 3830 bp
GC Content 0.53 %
Created at NCBI July 29, 2020



Assembly

Genome Data Information

Accession GCF_013596835.1
Assembly Coverage 159.376


Biosample

Curated Collection Information
Accession 15148269

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query culture,Pooled pig faecal samples collected from floor of farm
Classification cell_culture,fecal,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP068021.1 See Comparison
CP082420.1 See Comparison
CP082408.1 See Comparison
CP082467.1 See Comparison
CP082514.1 See Comparison
NZ_CP025336.1 See Comparison
NZ_OP927718.1 See Comparison
NZ_OP927726.1 See Comparison
CP123658.1 See Comparison
NZ_CP149277.1 See Comparison
NZ_AP027863.1 See Comparison
NZ_CP051376.1 See Comparison
NZ_CP051362.1 See Comparison
NZ_CP054465.1 See Comparison
NZ_CP055606.1 See Comparison
NZ_OP927718.1 See Comparison
NZ_CP057362.1 See Comparison
NZ_CP100700.1 See Comparison
NZ_CP068021.1 See Comparison
CP082420.1 See Comparison
CP082408.1 See Comparison
CP082467.1 See Comparison
CP082514.1 See Comparison
NZ_CP025336.1 See Comparison
NZ_CP060521.1 See Comparison
NZ_CP056965.1 See Comparison
NZ_CP056972.1 See Comparison
NZ_OP927726.1 See Comparison
NZ_CP051362.1 See Comparison
CP123658.1 See Comparison
NZ_CP149277.1 See Comparison
NZ_CP055680.1 See Comparison
NZ_CP055606.1 See Comparison
NZ_AP027863.1 See Comparison
NZ_CP100700.1 See Comparison
NZ_CP051376.1 See Comparison
NZ_CP060521.1 See Comparison
NZ_CP057362.1 See Comparison
NZ_CP056965.1 See Comparison
NZ_CP056972.1 See Comparison
NZ_CP054465.1 See Comparison
CP082420.1 See Comparison
NZ_CP068021.1 See Comparison
CP082408.1 See Comparison
CP082467.1 See Comparison
CP082514.1 See Comparison
NZ_CP025336.1 See Comparison
NZ_CP055606.1 See Comparison
NZ_OP927718.1 See Comparison
NZ_OP927726.1 See Comparison
CP123658.1 See Comparison
NZ_CP149277.1 See Comparison
NZ_AP027863.1 See Comparison
NZ_CP051362.1 See Comparison
NZ_CP054465.1 See Comparison
NZ_CP060521.1 See Comparison
NZ_CP051376.1 See Comparison
NZ_CP057362.1 See Comparison
NZ_CP056965.1 See Comparison
NZ_CP056972.1 See Comparison
NZ_CP100700.1 See Comparison
NZ_CP068021.1 See Comparison
CP082467.1 See Comparison
CP082514.1 See Comparison
CP123658.1 See Comparison
CP082420.1 See Comparison
CP082408.1 See Comparison
NZ_OP927718.1 See Comparison
NZ_OP927726.1 See Comparison
NZ_CP025336.1 See Comparison
NZ_CP149277.1 See Comparison
NZ_CP051376.1 See Comparison
NZ_AP027863.1 See Comparison
NZ_CP051362.1 See Comparison
NZ_CP054465.1 See Comparison
NZ_CP055606.1 See Comparison
NZ_CP100700.1 See Comparison
NZ_CP060521.1 See Comparison
NZ_CP057362.1 See Comparison
NZ_CP056965.1 See Comparison
NZ_CP056972.1 See Comparison
NZ_CP068021.1 See Comparison
CP082420.1 See Comparison
CP082514.1 See Comparison
CP082408.1 See Comparison
CP082467.1 See Comparison
NZ_CP025336.1 See Comparison
NZ_CP051362.1 See Comparison
CP123658.1 See Comparison
NZ_CP149277.1 See Comparison
NZ_AP027863.1 See Comparison
NZ_CP055606.1 See Comparison
NZ_OP927718.1 See Comparison
NZ_OP927726.1 See Comparison
NZ_CP054465.1 See Comparison
NZ_CP060521.1 See Comparison
NZ_CP051376.1 See Comparison
NZ_CP057362.1 See Comparison
NZ_CP056965.1 See Comparison
NZ_CP056972.1 See Comparison
CP082420.1 See Comparison
NZ_CP100700.1 See Comparison
NZ_CP068021.1 See Comparison
CP082408.1 See Comparison
CP082467.1 See Comparison
CP082514.1 See Comparison
CP123658.1 See Comparison
NZ_CP025336.1 See Comparison
NZ_OP927718.1 See Comparison
NZ_OP927726.1 See Comparison
NZ_CP149277.1 See Comparison
NZ_CP051362.1 See Comparison
NZ_AP027863.1 See Comparison
NZ_CP055606.1 See Comparison
NZ_CP054465.1 See Comparison
NZ_CP051376.1 See Comparison
NZ_CP057362.1 See Comparison
NZ_CP056965.1 See Comparison
NZ_CP056972.1 See Comparison
NZ_CP100700.1 See Comparison
NZ_CP060521.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore