Plasmid NZ_CP055208.1

Sequence

Nucleotide Information

Accession NZ_CP055208.1
Description Shigella flexneri strain STEFF_3 plasmid unnamed9, complete sequence
Source refseq
Topology circular
Length 2351 bp
GC Content 0.52 %
Created at NCBI Feb. 24, 2022



Assembly

Genome Data Information

Accession GCF_022354345.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 13925527

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 22.4N;114.2E
Original Query Type coordinates
Coordinates (Lat/Lon) 22.40/114.20
Address Lok Lam Road, Lok Lo Ha, Pat Tsz Wo, Lok Lo Ha Village, Sha Tin District, New Territories, Hong Kong, China

ECOSYSTEM
Original Query Shatin WWTPs_3 WWTPs effluent
Classification wastewater,wwtp
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore