Plasmid NZ_CP054740.1

Sequence

Nucleotide Information

Accession NZ_CP054740.1
Description Klebsiella pneumoniae strain KP20194c5 plasmid pKP20194c5-p2, complete sequence
Source refseq
Topology circular
Length 123177 bp
GC Content 0.54 %
Created at NCBI June 18, 2020



Assembly

Genome Data Information

Accession GCF_013348985.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 15186444

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 27.72N;112E
Original Query Type coordinates
Coordinates (Lat/Lon) 27.72/112.00
Address 新科街, Leping Subdistrict, Louxing District, Loudi, Hunan, 417000, China

ECOSYSTEM
Original Query monitor panel
Classification anthropogenic
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_CP054758.1
    • Description: Klebsiella pneumoniae strain KP20194c plasmid pKP20194c-p2, complete sequence
    • Source: refseq
    • Created at NCBI: June 18, 2020

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (573)
  • Biosample
    Accession: 15186441
  • GEOGRAPHICAL INFORMATION
    • Original Query: 27.72N;112E
    • Original Query Type: coordinates
    • Address: 新科街, Leping Subdistrict, Louxing District, Loudi, Hunan, 417000, China
    • Coordinates (Lat/Lon): 27.72/112.00
  • ECOSYSTEM
    • Original Query: Homo sapiens,sputum
    • Classification: host_associated,respiratory_system
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Pneumoniae
    • DOID/SYMP:
      • Pneumonia (DOID:552 )
        • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP054734.1
    • Description: Klebsiella pneumoniae strain KP20194d plasmid pKP20194d-p2, complete sequence
    • Source: refseq
    • Created at NCBI: June 18, 2020

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (573)
  • Biosample
    Accession: 15186445
  • GEOGRAPHICAL INFORMATION
    • Original Query: 27.72N;112E
    • Original Query Type: coordinates
    • Address: 新科街, Leping Subdistrict, Louxing District, Loudi, Hunan, 417000, China
    • Coordinates (Lat/Lon): 27.72/112.00
  • ECOSYSTEM
    • Original Query: Homo sapiens,sputum
    • Classification: host_associated,respiratory_system
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Pneumoniae
    • DOID/SYMP:
      • Pneumonia (DOID:552 )
        • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2