Plasmid NZ_CP054383.1

Sequence

Nucleotide Information

Accession NZ_CP054383.1
Description Escherichia coli strain SCU-175 plasmid pSCU-175-4, complete sequence
Source refseq
Topology circular
Length 6237 bp
GC Content 0.49 %
Created at NCBI Aug. 4, 2020



Biosample

Curated Collection Information
Accession 14943546

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,California
Original Query Type name
Coordinates (Lat/Lon) 36.70/-118.76
Address USA,California

ECOSYSTEM
Original Query Homo sapiens,whole organism,rectal swab from healthy college student
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP054383.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGRop family plasmid primer RNA-binding proteincopy
PGAGcolicin E1 immunity proteincopy
PGAGcolicin-like pore-forming proteincopy
PGAGhypothetical proteincopy
PGAGExc2 family lipoproteincopy
MOB-typerMOBPcopy
MOB-typerMOBPcopy
MOB-typerrep_cluster_2350copy
MOB-typerMOBPcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 9 of 9 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTNC_017721MOBP11531241minus98.8761003.19e-37159
repliconCP035723_00002rep_cluster_235012511810plus93.6061000833
relaxaseLT985292_00003MOBP2244minus97.531818.860000000000001e-43157
relaxaseLT985292_00003MOBP60806235minus96.154811.31e-26111
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 4 of 4 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2