Plasmid NZ_CP054164.1

Sequence

Nucleotide Information

Accession NZ_CP054164.1
Description Escherichia coli strain STO_Bone2 plasmid pBone2_3, complete sequence
Source refseq
Topology circular
Length 1393 bp
GC Content 0.50 %
Created at NCBI Jan. 20, 2022



Assembly

Genome Data Information

Accession GCF_021498145.1
Assembly Coverage 1043


Biosample

Curated Collection Information
Accession 15006795

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 59.351331N;18.026000E
Original Query Type coordinates
Coordinates (Lat/Lon) 59.35/18.03
Address 19, Karolinska vägen, Solna Kyrkby, Solna kommun, Stockholm County, 171 64, Sweden

ECOSYSTEM
Original Query Homo sapiens,bone infection of foot
Classification bone,disease,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Focal infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP054164.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore