Plasmid NZ_CP053901.1

Sequence

Nucleotide Information

Accession NZ_CP053901.1
Description Proteus mirabilis strain YPM35 plasmid pJPM35-3, complete sequence
Source refseq
Topology circular
Length 26385 bp
GC Content 0.27 %
Created at NCBI June 4, 2020



Assembly

Genome Data Information

Accession GCF_013256075.1
Assembly Coverage 640


Biosample

Curated Collection Information
Accession 15002272

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 21N;110E
Original Query Type coordinates
Coordinates (Lat/Lon) 21.00/110.00
Address Leizhou City, Zhanjiang City, Guangdong Province, China

ECOSYSTEM
Original Query duck,intestine
Classification gastrointestinal_system,host_associated
Host-associated Taxon
  • Anas platyrhynchos (8839)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP053901.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore