Plasmid NZ_CP053727.1

Sequence

Nucleotide Information

Accession NZ_CP053727.1
Description Escherichia coli strain CP66-6_Sichuan plasmid pCP66-6-IncQ, complete sequence
Source refseq
Topology circular
Length 8197 bp
GC Content 0.61 %
Created at NCBI June 2, 2020



Assembly

Genome Data Information

Accession GCF_013201195.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 14944005

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Sichuan
Original Query Type name
Coordinates (Lat/Lon) 30.50/102.50
Address China,Sichuan

ECOSYSTEM
Original Query pig,cell culture,slaughterhouse
Classification anthropogenic,cell_culture,construction,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgisul2copy
PGAGhelicase RepA family proteincopy
PGAGrepCcopy
PGAGcation diffusion facilitator family transportercopy
PGAGmetalloregulator ArsR/SmtB family transcription factorcopy
PGAGhypothetical proteincopy
PGAGmobilization proteincopy
PGAGIncQ-type mobilization protein MobBcopy
PGAGDNA-primase RepB domain-containing proteincopy
PGAGurfFcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 13 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTCP016527MOBQ55325689plus93.6711001.08e-59235
replicon000192__AM183225_00009IncQ118840plus97.8139601421
relaxaseCP022499MOBQ57787904plus95.76910001258
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 3 of 3 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2