Plasmid NZ_CP053018.1

Sequence

Nucleotide Information

Accession NZ_CP053018.1
Description Klebsiella pneumoniae strain KPN361 plasmid pKPN361-2, complete sequence
Source refseq
Topology circular
Length 220791 bp
GC Content 0.51 %
Created at NCBI Feb. 9, 2021



Assembly

Genome Data Information

Accession GCF_016804025.1
Assembly Coverage 872


Biosample

Curated Collection Information
Accession 14752225

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Yunnan
Original Query Type name
Coordinates (Lat/Lon) 25.00/102.00
Address China,Yunnan

ECOSYSTEM
Original Query Homo sapiens,cell culture
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP053018.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusaph(3')-Iacopy
amrfinderplusdfrA1copy
rgimphAcopy
amrfinderpluspcoDcopy
rgiMrxcopy
amrfinderpluspcoScopy
amrfinderpluspcoCcopy
amrfinderpluspcoRcopy
amrfinderplusqnrS1copy
amrfinderpluspcoBcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 242 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_014312_00116MPF_F184982185284plus1001005.81e-61206
mate-pair-formationNC_014312_00118MPF_F185860186597plus97.9671001.07e-156488
mate-pair-formationNC_023332_00154MPF_F186600188021plus99.3671000787
mate-pair-formationNC_019389_00068MPF_F188702189217plus94.186893.73e-104335
mate-pair-formationNC_021502_00131MPF_T191986194622plus95.33610001739
mate-pair-formationNC_014312_00128MPF_F195014195646plus98.1041003.5e-115367
mate-pair-formationNC_022609_00081MPF_F196082197068plus95.1521000652
mate-pair-formationNC_011281_00082MPF_F197347197991plus95.3491009.95e-125395
mate-pair-formationNC_021654_00016MPF_F198044200005plus98.4719801243
mate-pair-formationNC_019165_00034MPF_F202899204251plus95.344990797
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 16 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2