Plasmid NZ_CP050766.1

Sequence

Nucleotide Information

Accession NZ_CP050766.1
Description Salmonella enterica subsp. enterica serovar Indiana strain SI111 plasmid pSI111-2, complete sequence
Source refseq
Topology circular
Length 3916 bp
GC Content 0.43 %
Created at NCBI April 8, 2020



Assembly

Genome Data Information

Accession GCF_012053145.1
Assembly Coverage 124


Biosample

Curated Collection Information
Accession 14450156

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 31.23N;121.47E
Original Query Type coordinates
Coordinates (Lat/Lon) 31.23/121.47
Address People's Square, 120, People's Avenue, Jiangyin, Nanjingdonglu Subdistrict, Shanghai, Huangpu District, Shanghai, 200001, China

ECOSYSTEM
Original Query Homo sapiens,Diarrheal patient
Classification disease,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP
  • Diarrhea (DOID:13250 )
    • A gastrointestinal system disease described as the condition of having frequent loose or liquid bowel movements. Acute diarrhea is a common cause of death in developing countries and the second most common cause of infant deaths worldwide. The loss of fluids through diarrhea can cause severe dehydration which is one cause of death in diarrhea sufferers. Along with water, sufferers also lose dangerous amounts of important salts, electrolytes, and other nutrients. There are at least four types of diarrhea: secretory diarrhea, osmotic diarrhea, motility-related diarrhea, and inflammatory diarrhea.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGRloB family proteincopy
PGAGATP-binding proteincopy
PGAGmobAcopy
PGAGRop family plasmid primer RNA-binding proteincopy
MOB-typerrep_cluster_2350copy
MOB-typerMOBFcopy
MOB-typerMOB_unknowncopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 7 of 7 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTNZ_CP014319MOB_unknown33613603minus1001005.9300000000000005e-124449
repliconCP041342_00001rep_cluster_23501475plus94.375970728
relaxaseCP019897MOBF30323352minus99.0651003.2999999999999996e-62210
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 3 of 3 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2