Plasmid NZ_CP050725.1

Sequence

Nucleotide Information

Accession NZ_CP050725.1
Description Salmonella enterica subsp. enterica serovar Enteritidis strain SE74 plasmid pSE74-2, complete sequence
Source refseq
Topology circular
Length 64336 bp
GC Content 0.52 %
Created at NCBI April 8, 2020



Assembly

Genome Data Information

Accession GCF_012050905.1
Assembly Coverage 97


Biosample

Curated Collection Information
Accession 14450169

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 31.23N;121.47E
Original Query Type coordinates
Coordinates (Lat/Lon) 31.23/121.47
Address People's Square, 120, People's Avenue, Jiangyin, Nanjingdonglu Subdistrict, Shanghai, Huangpu District, Shanghai, 200001, China

ECOSYSTEM
Original Query Homo sapiens,Diarrheal patient
Classification disease,fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP
  • Diarrhea (DOID:13250 )
    • A gastrointestinal system disease described as the condition of having frequent loose or liquid bowel movements. Acute diarrhea is a common cause of death in developing countries and the second most common cause of infant deaths worldwide. The loss of fluids through diarrhea can cause severe dehydration which is one cause of death in diarrhea sufferers. Along with water, sufferers also lose dangerous amounts of important salts, electrolytes, and other nutrients. There are at least four types of diarrhea: secretory diarrhea, osmotic diarrhea, motility-related diarrhea, and inflammatory diarrhea.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP074430.1 See Comparison
NZ_CP136143.1 See Comparison
NZ_CP136150.1 See Comparison
NZ_OP927719.1 See Comparison
NZ_CP126141.1 See Comparison
NZ_CP125221.1 See Comparison
NZ_CP140787.1 See Comparison
NZ_CP122302.1 See Comparison
NZ_CP071687.1 See Comparison
NZ_CP071691.1 See Comparison
NZ_CP136143.1 See Comparison
NZ_CP100725.1 See Comparison
NZ_CP100667.1 See Comparison
NZ_CP121004.1 See Comparison
NZ_CP120838.1 See Comparison
NZ_CP074430.1 See Comparison
NZ_CP136150.1 See Comparison
NZ_OP927719.1 See Comparison
NZ_CP125221.1 See Comparison
NZ_CP126141.1 See Comparison
NZ_CP140787.1 See Comparison
NZ_CP121004.1 See Comparison
NZ_CP122302.1 See Comparison
NZ_CP071687.1 See Comparison
NZ_CP071691.1 See Comparison
NZ_CP120838.1 See Comparison
NZ_CP074430.1 See Comparison
NZ_CP100725.1 See Comparison
NZ_CP100667.1 See Comparison
NZ_CP126141.1 See Comparison
NZ_CP136143.1 See Comparison
NZ_CP136150.1 See Comparison
NZ_OP927719.1 See Comparison
NZ_CP122302.1 See Comparison
NZ_CP125221.1 See Comparison
NZ_CP140787.1 See Comparison
NZ_CP071687.1 See Comparison
NZ_CP071691.1 See Comparison
NZ_CP074430.1 See Comparison
NZ_CP121004.1 See Comparison
NZ_CP120838.1 See Comparison
NZ_CP100725.1 See Comparison
NZ_CP100667.1 See Comparison
NZ_CP136143.1 See Comparison
NZ_CP136150.1 See Comparison
NZ_CP126141.1 See Comparison
NZ_OP927719.1 See Comparison
NZ_CP071687.1 See Comparison
NZ_CP125221.1 See Comparison
NZ_CP140787.1 See Comparison
NZ_CP071691.1 See Comparison
NZ_OP927719.1 See Comparison
NZ_CP121004.1 See Comparison
NZ_CP120838.1 See Comparison
NZ_CP100725.1 See Comparison
NZ_CP100667.1 See Comparison
NZ_CP122302.1 See Comparison
NZ_CP074430.1 See Comparison
NZ_CP136143.1 See Comparison
NZ_CP136150.1 See Comparison
NZ_CP126141.1 See Comparison
NZ_CP125221.1 See Comparison
NZ_CP140787.1 See Comparison
NZ_CP121004.1 See Comparison
NZ_CP120838.1 See Comparison
NZ_CP100725.1 See Comparison
NZ_CP100667.1 See Comparison
NZ_OP927719.1 See Comparison
NZ_CP126141.1 See Comparison
NZ_CP071687.1 See Comparison
NZ_CP071691.1 See Comparison
NZ_CP122302.1 See Comparison
NZ_CP074430.1 See Comparison
NZ_CP136143.1 See Comparison
NZ_CP136150.1 See Comparison
NZ_CP071687.1 See Comparison
NZ_CP125221.1 See Comparison
NZ_CP140787.1 See Comparison
NZ_CP071691.1 See Comparison
NZ_CP122302.1 See Comparison
NZ_CP121004.1 See Comparison
NZ_CP120838.1 See Comparison
NZ_CP074430.1 See Comparison
NZ_CP100725.1 See Comparison
NZ_CP100667.1 See Comparison
NZ_CP136143.1 See Comparison
NZ_CP136150.1 See Comparison
NZ_OP927719.1 See Comparison
NZ_CP140787.1 See Comparison
NZ_CP125221.1 See Comparison
NZ_CP126141.1 See Comparison
NZ_CP071687.1 See Comparison
NZ_CP071691.1 See Comparison
NZ_CP122302.1 See Comparison
NZ_CP050725.1 See Comparison
NZ_CP121004.1 See Comparison
NZ_CP120838.1 See Comparison
NZ_CP100725.1 See Comparison
NZ_CP100667.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2