Plasmid NZ_CP050428.1

Sequence

Nucleotide Information

Accession NZ_CP050428.1
Description Acinetobacter baumannii strain PM194188 plasmid pPM194122_3, complete sequence
Source refseq
Topology circular
Length 7695 bp
GC Content 0.34 %
Created at NCBI May 2, 2020



Assembly

Genome Data Information

Accession GCF_012935105.1
Assembly Coverage 157.14


Biosample

Curated Collection Information
Accession 14420255

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 28.5659N;77.2111E
Original Query Type coordinates
Coordinates (Lat/Lon) 28.57/77.21
Address All India Institute of Medical Sciences (AIIMS), New Delhi, Gautam Nagar Road, Yusuf Sarai Market, Yusuf Sarai, New Delhi, Defence Colony Tehsil, South East Delhi District, Delhi, 110029, India

ECOSYSTEM
Original Query Homo sapiens,BAL
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query pneumonia
DOID/SYMP
  • Pneumonia (DOID:552 )
    • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP050428.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2