Plasmid NZ_CP050392.1

Sequence

Nucleotide Information

Accession NZ_CP050392.1
Description Acinetobacter baumannii strain VB11737 plasmid pVB11737_1, complete sequence
Source refseq
Topology circular
Length 70712 bp
GC Content 0.33 %
Created at NCBI May 2, 2020



Assembly

Genome Data Information

Accession GCF_012934965.1
Assembly Coverage 72.7314


Biosample

Curated Collection Information
Accession 14410107

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 12.9246N;79.1348E
Original Query Type coordinates
Coordinates (Lat/Lon) 12.92/79.13
Address Christian Medical College Hospital, Ida Scudder Road, Sathuvachari, Vellore, Vellore District, Tamil Nadu, 632004, India

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Blood stream
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP031382.1 See Comparison
NZ_CP029571.1 See Comparison
NZ_CP121589.1 See Comparison
NZ_CP121596.1 See Comparison
NZ_CP121561.1 See Comparison
NZ_CP121627.1 See Comparison
NZ_CP121568.1 See Comparison
NZ_CP121599.1 See Comparison
NZ_CP121564.1 See Comparison
NZ_CP156042.1 See Comparison
NZ_KR535992.1 See Comparison
NZ_CP050413.1 See Comparison
NZ_MH401130.1 See Comparison
CP119235.1 See Comparison
NZ_CP087349.1 See Comparison
NZ_CP087314.1 See Comparison
NZ_CP087352.1 See Comparison
NZ_CP087355.1 See Comparison
NZ_CP087345.1 See Comparison
NZ_CP091595.1 See Comparison
NZ_CP072302.1 See Comparison
NZ_CP072292.1 See Comparison
NZ_CP072277.1 See Comparison
NZ_CP072272.1 See Comparison
NC_025104.1 See Comparison
NZ_CP031382.1 See Comparison
NZ_CP029571.1 See Comparison
NZ_CP121589.1 See Comparison
NZ_CP121596.1 See Comparison
NZ_CP121561.1 See Comparison
NZ_CP121627.1 See Comparison
NZ_CP121568.1 See Comparison
NZ_CP121599.1 See Comparison
NZ_CP121564.1 See Comparison
CP119235.1 See Comparison
NZ_CP156042.1 See Comparison
NZ_KR535992.1 See Comparison
NZ_CP050413.1 See Comparison
NZ_CP050392.1 See Comparison
NC_025104.1 See Comparison
NZ_CP087349.1 See Comparison
NZ_CP087314.1 See Comparison
NZ_CP087352.1 See Comparison
NZ_CP087355.1 See Comparison
NZ_CP087345.1 See Comparison
NZ_CP072302.1 See Comparison
NZ_CP072292.1 See Comparison
NZ_CP072277.1 See Comparison
NZ_CP072272.1 See Comparison
NZ_MH401130.1 See Comparison
NZ_CP091595.1 See Comparison
NZ_CP121589.1 See Comparison
NZ_CP031382.1 See Comparison
NZ_CP029571.1 See Comparison
NZ_CP121596.1 See Comparison
NZ_CP121561.1 See Comparison
NZ_CP121627.1 See Comparison
NZ_CP121568.1 See Comparison
NZ_CP121599.1 See Comparison
NZ_CP121564.1 See Comparison
NZ_CP156042.1 See Comparison
NZ_KR535992.1 See Comparison
NZ_CP050413.1 See Comparison
NZ_MH401130.1 See Comparison
NZ_CP087314.1 See Comparison
NZ_CP087352.1 See Comparison
NZ_CP087355.1 See Comparison
NZ_CP087345.1 See Comparison
CP119235.1 See Comparison
NZ_CP121589.1 See Comparison
NZ_CP087349.1 See Comparison
NZ_CP072302.1 See Comparison
NZ_CP072292.1 See Comparison
NZ_CP072277.1 See Comparison
NZ_CP072272.1 See Comparison
NC_025104.1 See Comparison
NZ_CP091595.1 See Comparison
NZ_CP031382.1 See Comparison
NZ_CP029571.1 See Comparison
NZ_CP121596.1 See Comparison
NZ_CP121561.1 See Comparison
NZ_CP121627.1 See Comparison
NZ_CP121568.1 See Comparison
NZ_CP121599.1 See Comparison
NZ_CP121564.1 See Comparison
NZ_CP050413.1 See Comparison
NZ_CP156042.1 See Comparison
NZ_KR535992.1 See Comparison
CP119235.1 See Comparison
NZ_CP087349.1 See Comparison
NZ_CP087355.1 See Comparison
NZ_CP087345.1 See Comparison
NZ_CP087314.1 See Comparison
NZ_CP087352.1 See Comparison
NZ_CP031382.1 See Comparison
NZ_MH401130.1 See Comparison
NZ_CP091595.1 See Comparison
NZ_CP072302.1 See Comparison
NZ_CP072292.1 See Comparison
NZ_CP072277.1 See Comparison
NZ_CP072272.1 See Comparison
NC_025104.1 See Comparison
NZ_CP121589.1 See Comparison
NZ_CP029571.1 See Comparison
NZ_CP121627.1 See Comparison
NZ_CP121568.1 See Comparison
NZ_CP121599.1 See Comparison
NZ_CP121564.1 See Comparison
NZ_CP121596.1 See Comparison
NZ_CP121561.1 See Comparison
NZ_KR535992.1 See Comparison
NZ_CP156042.1 See Comparison
NZ_MH401130.1 See Comparison
NZ_CP050413.1 See Comparison
CP119235.1 See Comparison
NZ_CP087349.1 See Comparison
NZ_CP087314.1 See Comparison
NZ_CP087352.1 See Comparison
NZ_CP087355.1 See Comparison
NZ_CP087345.1 See Comparison
NZ_CP121589.1 See Comparison
NZ_CP031382.1 See Comparison
NZ_CP091595.1 See Comparison
NZ_CP072302.1 See Comparison
NZ_CP072292.1 See Comparison
NZ_CP072277.1 See Comparison
NZ_CP072272.1 See Comparison
NC_025104.1 See Comparison
NZ_CP029571.1 See Comparison
NZ_CP121627.1 See Comparison
NZ_CP121568.1 See Comparison
NZ_CP121599.1 See Comparison
NZ_CP121596.1 See Comparison
NZ_CP121564.1 See Comparison
NZ_CP121561.1 See Comparison
NZ_CP156042.1 See Comparison
NZ_CP050413.1 See Comparison
NZ_KR535992.1 See Comparison
NZ_CP031382.1 See Comparison
CP119235.1 See Comparison
NZ_CP087349.1 See Comparison
NZ_CP087314.1 See Comparison
NZ_CP087352.1 See Comparison
NZ_CP087355.1 See Comparison
NZ_CP087345.1 See Comparison
NZ_MH401130.1 See Comparison
NZ_CP091595.1 See Comparison
NZ_CP072302.1 See Comparison
NZ_CP072292.1 See Comparison
NZ_CP072277.1 See Comparison
NZ_CP072272.1 See Comparison
NC_025104.1 See Comparison
NZ_CP029571.1 See Comparison
NZ_CP121589.1 See Comparison
NZ_CP121596.1 See Comparison
NZ_CP121599.1 See Comparison
NZ_CP121561.1 See Comparison
NZ_CP121627.1 See Comparison
NZ_CP121564.1 See Comparison
NZ_CP121568.1 See Comparison
NZ_CP050413.1 See Comparison
NZ_MH401130.1 See Comparison
NC_025104.1 See Comparison
NZ_CP156042.1 See Comparison
NZ_KR535992.1 See Comparison
CP119235.1 See Comparison
NZ_CP087349.1 See Comparison
NZ_CP087314.1 See Comparison
NZ_CP087352.1 See Comparison
NZ_CP087355.1 See Comparison
NZ_CP087345.1 See Comparison
NZ_CP091595.1 See Comparison
NZ_CP072302.1 See Comparison
NZ_CP072292.1 See Comparison
NZ_CP072277.1 See Comparison
NZ_CP072272.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2