Plasmid NZ_CP048372.1

Sequence

Nucleotide Information

Accession	NZ_CP048372.1
Description	Escherichia coli strain 163 plasmid pC-F-163_A, complete sequence
Source	refseq
Topology	circular
Length	90244 bp
GC Content	0.52 %
Created at NCBI	Feb. 20, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_010365505.1
Assembly Coverage	80

Biosample

Curated Collection Information

Accession	13951917

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Switzerland
Original Query Type	name
Coordinates (Lat/Lon)	46.80/8.23
Address	Switzerland

ECOSYSTEM

Original Query	cell culture,environment
Classification	cell_culture
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP048372.1	See Comparison

Plasmid Visualization

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Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	rmtB1		copy
amrfinderplus	mph(A)		copy
amrfinderplus	erm(B)		copy
rgi	mphA		copy
amrfinderplus	blaTEM-1		copy
rgi	rmtB		copy
rgi	Mrx		copy
rgi	ErmB		copy
PGAG	hypothetical protein		copy
PGAG	hypothetical protein		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 115 entries

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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

oriT	KX710094	MOBF	34076	34364	plus	100	100	1.93e-149	534
replicon	000136__AP014877_00014	IncFIA	73091	73948	plus	97.669	100	0	1474
relaxase	NC_017627_00068	MOBF	59294	64561	plus	97.95	100	0	3362
mate-pair-formation	NC_022651_00077	MPF_F	36602	36910	plus	100	99	4.03e-63	213
mate-pair-formation	NC_010409_00124	MPF_F	37488	38213	plus	98.76	100	4.19e-156	486
mate-pair-formation	NC_019094_00090	MPF_F	38216	39610	plus	96.137	96	0	815
mate-pair-formation	NC_017639_00094	MPF_F	40667	41179	plus	97.076	100	9.07e-97	312
mate-pair-formation	NC_013437_00116	MPF_T	41698	44319	plus	90.618	99	0	1640
mate-pair-formation	NC_007675_00027	MPF_F	44705	45334	plus	99.524	97	1.02e-135	426
mate-pair-formation	NC_017639_00100	MPF_F	45334	46290	plus	99.06	91	0	607
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 10 of 14 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2