Plasmid NZ_CP047838.1

Sequence

Nucleotide Information

Accession	NZ_CP047838.1
Description	Staphylococcus aureus strain UP_719 plasmid unnamed, complete sequence
Source	refseq
Topology	circular
Length	20654 bp
GC Content	0.28 %
Created at NCBI	Jan. 23, 2020

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Staphylococcus aureus (1280)

Lineage

Superkingdom	Bacteria (2)
Phylum	Bacillota (1239)
Class	Bacilli (91061)
Order	Bacillales (1385)
Family	Staphylococcaceae (90964)
Genus	Staphylococcus (1279)
Species	Staphylococcus_aureus (1280)
Strain

Assembly

Genome Data Information

Accession	GCF_009912695.1
Assembly Coverage	None

Biosample

Curated Collection Information

Accession	11175614

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	None
Original Query Type	None
Coordinates (Lat/Lon)
Address	None

ECOSYSTEM

Original Query	Homo sapiens
Classification	host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Similar Plasmids

based on Mash distance

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NC_013304.1	See Comparison
NC_013303.1	See Comparison
NC_013301.1	See Comparison
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NZ_CP022719.1	See Comparison
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CP127774.1	See Comparison
CP127786.1	See Comparison
CP127734.1	See Comparison
CP127724.1	See Comparison
CP127738.1	See Comparison
CP127712.1	See Comparison
CP127703.1	See Comparison
CP127701.1	See Comparison
CP127690.1	See Comparison
CP127699.1	See Comparison
CP127695.1	See Comparison
CP127730.1	See Comparison
CP127682.1	See Comparison
CP127693.1	See Comparison
CP127685.1	See Comparison
CP127643.1	See Comparison
CP127635.1	See Comparison
CP127632.1	See Comparison
NZ_CP120021.1	See Comparison
NZ_CP130548.1	See Comparison
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CP127630.1	See Comparison
CP127617.1	See Comparison
CP127610.1	See Comparison
CP127593.1	See Comparison
CP127574.1	See Comparison
CP127555.1	See Comparison
CP127550.1	See Comparison
CP151892.1	See Comparison
NZ_CP151128.1	See Comparison
CP049444.1	See Comparison
NZ_CP150738.1	See Comparison
NZ_CP120037.1	See Comparison
CP045475.1	See Comparison
NZ_MH785247.1	See Comparison
NZ_MH785254.1	See Comparison
NZ_CP047829.1	See Comparison
NZ_CP070984.1	See Comparison
CP049391.1	See Comparison
NZ_CP149806.1	See Comparison
NZ_CP138668.1	See Comparison
NZ_CP047812.1	See Comparison
NZ_CP047827.1	See Comparison
NZ_CP047846.1	See Comparison
NZ_CP047844.1	See Comparison
NZ_CP043844.1	See Comparison
CP051940.1	See Comparison
CP121237.1	See Comparison
CP121241.1	See Comparison
CP121239.1	See Comparison
CP121235.1	See Comparison
NZ_CP062323.1	See Comparison
NZ_CP086573.1	See Comparison
NZ_CP086575.1	See Comparison
NZ_CP062429.1	See Comparison
NZ_CP062438.1	See Comparison
NZ_CP062432.1	See Comparison
NZ_CP062337.1	See Comparison
NZ_CP062328.1	See Comparison
NZ_CP062349.1	See Comparison
NZ_CP062343.1	See Comparison
NZ_CP062385.1	See Comparison
NZ_CP062341.1	See Comparison
NZ_CP062355.1	See Comparison
NZ_CP062335.1	See Comparison
NZ_CP083807.1	See Comparison
NZ_CP077910.1	See Comparison
NZ_CP089155.1	See Comparison
NZ_CP089164.1	See Comparison
NZ_CP092073.1	See Comparison
NZ_CP080252.1	See Comparison
NZ_CP083672.1	See Comparison
CP075571.1	See Comparison
CP075573.1	See Comparison
CP075575.1	See Comparison
CP075577.1	See Comparison
CP075579.1	See Comparison
NZ_CP019564.1	See Comparison
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NC_013301.1	See Comparison
NZ_CP029083.1	See Comparison
NZ_CP024999.1	See Comparison
NZ_CP019575.1	See Comparison
NZ_CP012973.1	See Comparison
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NC_017339.1	See Comparison
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CP127808.1	See Comparison
CP127776.1	See Comparison
CP127774.1	See Comparison
CP127786.1	See Comparison
CP127734.1	See Comparison
CP127724.1	See Comparison
CP127738.1	See Comparison
CP127712.1	See Comparison
CP127703.1	See Comparison
CP127701.1	See Comparison
CP127690.1	See Comparison
CP127699.1	See Comparison
CP127695.1	See Comparison
CP127730.1	See Comparison
CP127682.1	See Comparison
CP127693.1	See Comparison
CP127685.1	See Comparison
CP127617.1	See Comparison
CP127610.1	See Comparison
CP127593.1	See Comparison
CP127574.1	See Comparison
CP127643.1	See Comparison
CP127635.1	See Comparison
CP127632.1	See Comparison
CP127555.1	See Comparison
CP127550.1	See Comparison
NZ_CP149806.1	See Comparison
NZ_CP150738.1	See Comparison
CP152359.1	See Comparison
CP151892.1	See Comparison
NZ_CP151128.1	See Comparison
NZ_CP120037.1	See Comparison
NZ_CP138668.1	See Comparison
CP045475.1	See Comparison
NZ_MH785247.1	See Comparison
NZ_MH785254.1	See Comparison
NZ_CP047812.1	See Comparison
NZ_CP047827.1	See Comparison
NZ_CP047846.1	See Comparison
NZ_CP047844.1	See Comparison
NZ_CP043844.1	See Comparison
NZ_CP047829.1	See Comparison
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CP121237.1	See Comparison
CP049444.1	See Comparison
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CP049391.1	See Comparison
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NZ_CP062337.1	See Comparison
NZ_CP062385.1	See Comparison
NZ_CP062341.1	See Comparison
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NZ_CP089164.1	See Comparison
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CP075573.1	See Comparison
CP075575.1	See Comparison
CP075577.1	See Comparison
CP075579.1	See Comparison
NZ_AP024319.1	See Comparison
NZ_AP024316.1	See Comparison
NZ_CP080005.1	See Comparison
NZ_CP080002.1	See Comparison
NZ_CP012971.1	See Comparison
NZ_CP012980.1	See Comparison
NZ_CP012973.1	See Comparison
NZ_CP077910.1	See Comparison
NZ_CP083672.1	See Comparison
NZ_CP019564.1	See Comparison
NC_013290.1	See Comparison
NC_017339.1	See Comparison
NZ_CP029083.1	See Comparison
NZ_CP022719.1	See Comparison
NZ_CP022721.1	See Comparison
NC_013313.1	See Comparison
NC_013304.1	See Comparison
NC_013303.1	See Comparison
NC_013301.1	See Comparison
NZ_CP024999.1	See Comparison
NZ_CP019575.1	See Comparison
NZ_CP120021.1	See Comparison
NC_005951.1	See Comparison
NC_005011.1	See Comparison
NZ_CP017681.1	See Comparison
NZ_CP130548.1	See Comparison
NZ_CP130514.1	See Comparison
CP127823.1	See Comparison
CP127593.1	See Comparison
CP127808.1	See Comparison
CP127776.1	See Comparison
CP127774.1	See Comparison
CP127786.1	See Comparison
CP127574.1	See Comparison
CP127734.1	See Comparison
CP127724.1	See Comparison
CP127555.1	See Comparison
CP127550.1	See Comparison
CP127738.1	See Comparison
CP127712.1	See Comparison
CP127703.1	See Comparison
CP127701.1	See Comparison
CP127690.1	See Comparison
CP127699.1	See Comparison
CP127695.1	See Comparison
CP127730.1	See Comparison
CP127682.1	See Comparison
CP127693.1	See Comparison
CP127685.1	See Comparison
CP127643.1	See Comparison
CP127635.1	See Comparison
CP127632.1	See Comparison
CP127630.1	See Comparison
CP127617.1	See Comparison
CP127610.1	See Comparison
NZ_CP150738.1	See Comparison
CP152359.1	See Comparison
CP151892.1	See Comparison
NZ_CP151128.1	See Comparison
NZ_CP138668.1	See Comparison
NZ_CP149806.1	See Comparison
NZ_CP120037.1	See Comparison
CP045475.1	See Comparison
NZ_CP047844.1	See Comparison
NZ_MH785247.1	See Comparison
NZ_MH785254.1	See Comparison
NZ_CP043844.1	See Comparison
NZ_CP047829.1	See Comparison
CP051940.1	See Comparison
NZ_CP047812.1	See Comparison
NZ_CP047827.1	See Comparison
NZ_CP047846.1	See Comparison
NZ_CP070984.1	See Comparison
NZ_CP086573.1	See Comparison
CP049391.1	See Comparison
CP121237.1	See Comparison
CP121241.1	See Comparison
CP121239.1	See Comparison
CP121235.1	See Comparison
CP049444.1	See Comparison
NZ_CP086575.1	See Comparison
NZ_CP062355.1	See Comparison
NZ_CP062438.1	See Comparison
NZ_CP062432.1	See Comparison
NZ_CP062429.1	See Comparison
NZ_CP062335.1	See Comparison
NZ_CP062337.1	See Comparison
NZ_CP083807.1	See Comparison
NZ_CP062328.1	See Comparison
NZ_CP062343.1	See Comparison
NZ_CP062323.1	See Comparison
NZ_CP062349.1	See Comparison
NZ_CP062385.1	See Comparison
NZ_CP062341.1	See Comparison
NZ_CP089155.1	See Comparison
NZ_CP092073.1	See Comparison
NZ_CP080252.1	See Comparison
NZ_CP089164.1	See Comparison
NZ_CP077910.1	See Comparison
NZ_CP083672.1	See Comparison
CP075571.1	See Comparison
CP075579.1	See Comparison
CP075573.1	See Comparison
CP075575.1	See Comparison
CP075577.1	See Comparison
NZ_CP019564.1	See Comparison
NZ_AP024319.1	See Comparison
NZ_AP024316.1	See Comparison
NZ_CP080005.1	See Comparison
NZ_CP080002.1	See Comparison
NZ_CP029083.1	See Comparison
NZ_CP012971.1	See Comparison
NZ_CP012980.1	See Comparison
NZ_CP012973.1	See Comparison
NC_013313.1	See Comparison
NC_013304.1	See Comparison
NC_013303.1	See Comparison
NC_013301.1	See Comparison
NC_013293.1	See Comparison
NC_013290.1	See Comparison
NC_017339.1	See Comparison
NZ_CP022719.1	See Comparison
NZ_CP022721.1	See Comparison
NZ_CP120021.1	See Comparison
NZ_CP017681.1	See Comparison
NZ_CP024999.1	See Comparison
NZ_CP019575.1	See Comparison
NC_005951.1	See Comparison
NC_005011.1	See Comparison
NZ_CP130548.1	See Comparison
NZ_CP130514.1	See Comparison
CP127574.1	See Comparison
CP127823.1	See Comparison
CP127808.1	See Comparison
CP127776.1	See Comparison
CP127774.1	See Comparison
CP127786.1	See Comparison
CP127734.1	See Comparison
CP127724.1	See Comparison
CP127738.1	See Comparison
CP127712.1	See Comparison
CP127703.1	See Comparison
CP127701.1	See Comparison
CP127690.1	See Comparison
CP127699.1	See Comparison
CP127695.1	See Comparison
CP127730.1	See Comparison
CP127682.1	See Comparison
CP127693.1	See Comparison
CP127685.1	See Comparison
CP127643.1	See Comparison
CP127635.1	See Comparison
CP127632.1	See Comparison
CP127630.1	See Comparison
CP127555.1	See Comparison
CP127617.1	See Comparison
CP127610.1	See Comparison
CP127550.1	See Comparison
CP127593.1	See Comparison
NZ_CP151128.1	See Comparison
NZ_CP150738.1	See Comparison
CP152359.1	See Comparison
CP151892.1	See Comparison
CP051940.1	See Comparison
NZ_MH785247.1	See Comparison
NZ_MH785254.1	See Comparison
NZ_CP047829.1	See Comparison
NZ_CP047812.1	See Comparison
NZ_CP047827.1	See Comparison
NZ_CP047846.1	See Comparison
NZ_CP047844.1	See Comparison
NZ_CP070984.1	See Comparison
NZ_CP149806.1	See Comparison
NZ_CP138668.1	See Comparison
NZ_CP120037.1	See Comparison
CP045475.1	See Comparison
NZ_CP043844.1	See Comparison
CP121237.1	See Comparison
CP049391.1	See Comparison
CP049444.1	See Comparison
CP121241.1	See Comparison
CP121239.1	See Comparison
CP121235.1	See Comparison
NZ_CP086573.1	See Comparison
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NZ_CP062343.1	See Comparison
NZ_CP062323.1	See Comparison
NZ_CP062349.1	See Comparison
NZ_CP062385.1	See Comparison
NZ_CP062341.1	See Comparison
NZ_CP062355.1	See Comparison
NZ_CP062335.1	See Comparison
NZ_CP083807.1	See Comparison
NZ_CP080252.1	See Comparison
NZ_CP083672.1	See Comparison
NZ_CP089155.1	See Comparison
NZ_CP089164.1	See Comparison
NZ_CP077910.1	See Comparison
CP075571.1	See Comparison
CP075573.1	See Comparison
CP075575.1	See Comparison
CP075577.1	See Comparison
CP075579.1	See Comparison
NZ_CP019564.1	See Comparison
NZ_AP024319.1	See Comparison
NZ_AP024316.1	See Comparison
NZ_CP080005.1	See Comparison
NZ_CP080002.1	See Comparison
NZ_CP022719.1	See Comparison
NC_017339.1	See Comparison
NZ_CP012971.1	See Comparison
NZ_CP012980.1	See Comparison
NZ_CP012973.1	See Comparison
NC_013313.1	See Comparison
NC_013304.1	See Comparison
NC_013303.1	See Comparison
NC_013301.1	See Comparison
NC_013293.1	See Comparison
NC_013290.1	See Comparison
NZ_CP022721.1	See Comparison
NZ_CP017681.1	See Comparison
NZ_CP029083.1	See Comparison
CP127823.1	See Comparison
NZ_CP120021.1	See Comparison
NZ_CP130548.1	See Comparison
NZ_CP130514.1	See Comparison
CP127555.1	See Comparison
NZ_CP024999.1	See Comparison
NZ_CP019575.1	See Comparison
NC_005951.1	See Comparison
NC_005011.1	See Comparison
CP127774.1	See Comparison
CP127786.1	See Comparison
CP127734.1	See Comparison
CP127724.1	See Comparison
CP127738.1	See Comparison
CP127712.1	See Comparison
CP127703.1	See Comparison
CP127701.1	See Comparison
CP127690.1	See Comparison
CP127699.1	See Comparison
CP127695.1	See Comparison
CP127730.1	See Comparison
CP127682.1	See Comparison
CP127693.1	See Comparison
CP127685.1	See Comparison
CP127643.1	See Comparison
CP127635.1	See Comparison
CP127632.1	See Comparison
CP127630.1	See Comparison
CP127617.1	See Comparison
CP127610.1	See Comparison
CP127593.1	See Comparison
CP127550.1	See Comparison
CP127808.1	See Comparison
CP127776.1	See Comparison
NZ_CP150738.1	See Comparison
CP127574.1	See Comparison
CP152359.1	See Comparison
CP151892.1	See Comparison
NZ_CP149806.1	See Comparison
NZ_CP151128.1	See Comparison
NZ_CP138668.1	See Comparison
NZ_CP120037.1	See Comparison
NZ_MH785247.1	See Comparison
CP045475.1	See Comparison
NZ_MH785254.1	See Comparison
NZ_CP047829.1	See Comparison
NZ_CP043844.1	See Comparison
NZ_CP047812.1	See Comparison
NZ_CP047827.1	See Comparison
NZ_CP047846.1	See Comparison
NZ_CP047844.1	See Comparison
NZ_CP070984.1	See Comparison
CP049391.1	See Comparison
CP051940.1	See Comparison
NZ_CP062429.1	See Comparison
CP121237.1	See Comparison
CP121241.1	See Comparison
CP121239.1	See Comparison
CP121235.1	See Comparison
NZ_CP086573.1	See Comparison
NZ_CP086575.1	See Comparison
CP049444.1	See Comparison
NZ_CP062438.1	See Comparison
NZ_CP062432.1	See Comparison
NZ_AP024319.1	See Comparison
NZ_CP062337.1	See Comparison
NZ_CP062328.1	See Comparison
NZ_CP062343.1	See Comparison
NZ_CP062323.1	See Comparison
NZ_CP062349.1	See Comparison
NZ_CP062385.1	See Comparison
NZ_CP062341.1	See Comparison
NZ_CP062355.1	See Comparison
NZ_CP062335.1	See Comparison
NZ_CP092073.1	See Comparison
NZ_CP080252.1	See Comparison
NZ_CP077910.1	See Comparison
NZ_CP083807.1	See Comparison
NZ_CP089155.1	See Comparison
NZ_CP089164.1	See Comparison
NZ_CP083672.1	See Comparison
CP075571.1	See Comparison
CP075573.1	See Comparison
CP075575.1	See Comparison
CP075577.1	See Comparison
CP075579.1	See Comparison
NZ_AP024316.1	See Comparison
NZ_CP012971.1	See Comparison
NZ_CP080005.1	See Comparison
NZ_CP080002.1	See Comparison
NZ_CP019564.1	See Comparison
NZ_CP012980.1	See Comparison
NZ_CP012973.1	See Comparison
NC_013313.1	See Comparison
NC_017339.1	See Comparison
NC_013304.1	See Comparison
NC_013303.1	See Comparison
NC_013301.1	See Comparison
NC_013293.1	See Comparison
NC_013290.1	See Comparison
NZ_CP022719.1	See Comparison
NZ_CP022721.1	See Comparison
NZ_CP029083.1	See Comparison
NZ_CP024999.1	See Comparison
NZ_CP019575.1	See Comparison
NC_005951.1	See Comparison
NZ_CP017681.1	See Comparison
NC_005011.1	See Comparison
CP127823.1	See Comparison
NZ_CP120021.1	See Comparison
NZ_CP130548.1	See Comparison
NZ_CP130514.1	See Comparison
CP127734.1	See Comparison
CP127724.1	See Comparison
CP127738.1	See Comparison
CP127712.1	See Comparison
CP127703.1	See Comparison
CP127701.1	See Comparison
CP127690.1	See Comparison
CP127699.1	See Comparison
CP127695.1	See Comparison
CP127730.1	See Comparison
CP127682.1	See Comparison
CP127693.1	See Comparison
CP127685.1	See Comparison
CP127643.1	See Comparison
CP127635.1	See Comparison
CP127632.1	See Comparison
CP127630.1	See Comparison
CP127617.1	See Comparison
CP127610.1	See Comparison
CP127593.1	See Comparison
CP127808.1	See Comparison
CP127776.1	See Comparison
CP127774.1	See Comparison
CP127574.1	See Comparison
CP127786.1	See Comparison
CP127555.1	See Comparison
CP152359.1	See Comparison
CP127550.1	See Comparison
CP151892.1	See Comparison
NZ_CP150738.1	See Comparison
NZ_CP149806.1	See Comparison
NZ_CP151128.1	See Comparison
NZ_CP047829.1	See Comparison
NZ_MH785247.1	See Comparison
NZ_MH785254.1	See Comparison
NZ_CP138668.1	See Comparison
NZ_CP120037.1	See Comparison
CP045475.1	See Comparison
NZ_CP047812.1	See Comparison
NZ_CP047827.1	See Comparison
NZ_CP043844.1	See Comparison
NZ_CP047846.1	See Comparison
NZ_CP047844.1	See Comparison
NZ_CP070984.1	See Comparison
CP049444.1	See Comparison
CP051940.1	See Comparison
CP049391.1	See Comparison
NZ_CP083807.1	See Comparison
NZ_CP086573.1	See Comparison
NZ_CP086575.1	See Comparison
NZ_CP062429.1	See Comparison
NZ_CP062438.1	See Comparison
NZ_CP062432.1	See Comparison
NZ_CP062337.1	See Comparison
NZ_CP062328.1	See Comparison
NZ_CP062343.1	See Comparison
NZ_CP062323.1	See Comparison
NZ_CP062349.1	See Comparison
NZ_CP062385.1	See Comparison
NZ_CP062341.1	See Comparison
CP121237.1	See Comparison
CP121241.1	See Comparison
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CP121235.1	See Comparison
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CP075571.1	See Comparison
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Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2