Plasmid NZ_CP046959.1

Sequence

Nucleotide Information

Accession NZ_CP046959.1
Description Klebsiella pneumoniae strain WCHKP015247 plasmid p1_015247, complete sequence
Source refseq
Topology circular
Length 80768 bp
GC Content 0.53 %
Created at NCBI Dec. 17, 2019



Assembly

Genome Data Information

Accession GCF_003038035.2
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 8624641

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Chengdu,Sichuan
Original Query Type name
Coordinates (Lat/Lon) 30.64/104.07
Address China,Chengdu,Sichuan

ECOSYSTEM
Original Query Homo sapiens,Pure Culture
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusqacEdelta1copy
amrfinderplusarr-3copy
amrfinderplusaadA16copy
amrfinderplusaac(6')-Ib-cr5copy
amrfinderplussul1copy
amrfinderplusdfrA27copy
rgiAAC(6')-Ib-cr6copy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 110 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_014312_00116MPF_F81118413plus1001004.22e-61207
mate-pair-formationNC_008612_00190MPF_T1726118142minus1001001.2e-176547
mate-pair-formationNC_007682_00044MPF_T1815618851minus1001001e-154481
mate-pair-formationNC_014368_00014MPF_T1907320110minus99.4221003.39e-180560
mate-pair-formationNC_011617_00041MPF_T2109523692minus10010001811
mate-pair-formationNC_009131_00030MPF_T2369524009minus1001006.63e-63212
replicon000204__CP008701_00115IncR5390954804plus98.54910001581
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 7 of 7 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2