Plasmid NZ_CP046419.1

Sequence

Nucleotide Information

Accession NZ_CP046419.1
Description Escherichia coli strain LZYWN_4 plasmid pS4-unknown1, complete sequence
Source refseq
Topology circular
Length 4305 bp
GC Content 0.49 %
Created at NCBI March 13, 2021



Assembly

Genome Data Information

Accession GCF_017310055.1
Assembly Coverage 1


Biosample

Curated Collection Information
Accession 13282710

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 34.16N;108.02E
Original Query Type coordinates
Coordinates (Lat/Lon) 34.16/108.02
Address Zhouzhi County, Xi'an, Shaanxi, China

ECOSYSTEM
Original Query swine,whole organism,liver
Classification host_associated,liver
Host-associated Taxon

DISEASE
Original Query Colibacillosis
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP046419.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGreplication initiation proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
MOB-typerrep_cluster_2373copy
SourceElement NameDisplaySequenceFavorite
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconLT985313_00005rep_cluster_237316111962plus96.591812.93e-164584
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
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Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2