Plasmid NZ_CP045678.1

Sequence

Nucleotide Information

Accession NZ_CP045678.1
Description Klebsiella pneumoniae strain WSD411 plasmid pWSD411_5, complete sequence
Source refseq
Topology circular
Length 94887 bp
GC Content 0.52 %
Created at NCBI Jan. 17, 2020



Assembly

Genome Data Information

Accession GCF_009884415.1
Assembly Coverage 12


Biosample

Curated Collection Information
Accession 12877715

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.26N;120.20E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.26/120.20
Address Qingchun Square, Qingchun Road (East), 钱杭社区, Sijiqing, Shangcheng District, Hangzhou City, Zhejiang, 310026, China

ECOSYSTEM
Original Query Homo sapiens,rectum
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 84

DISEASE
Original Query fracture, pulmonary embolism (PE), atrial fibrillation (Af), Chronic renal failure (CRF) and acute respiratory failure (ARF)
DOID/SYMP
  • Bone disease (DOID:0080001 )
    • A connective tissue disease that affects the structure or development of bone or causes an impairment of normal bone function.
  • Pulmonary embolism (DOID:9477 )
    • An artery disease characterized by a blockage of the main artery of the lung or one of its branches by a substance that has travelled from elsewhere in the body, e.g. a blood clot.
  • Respiratory failure (DOID:11162 )
    • A lung disease characterized by inadequate gas exchange by the respiratory system.
  • Chronic kidney disease (DOID:784 )
    • A kidney failure that is characterized by the gradual loss of kidney function.
  • Atrial fibrillation (DOID:0060224 )
    • A heart conduction disease that is characterized by uncoordinated electrical activity in the heart's upper chambers (the atria), which causes the heartbeat to become fast and irregular and has symptoms palpitations, weakness, fatigue, lightheadedness, dizziness, confusion, shortness of breath and chest pain.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP045678.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore