Plasmid NZ_CP045647.1

Sequence

Nucleotide Information

Accession NZ_CP045647.1
Description Staphylococcus epidermidis strain IRL01 plasmid pBPH0747-01, complete sequence
Source refseq
Topology circular
Length 13568 bp
GC Content 0.29 %
Created at NCBI Nov. 24, 2019



Assembly

Genome Data Information

Accession GCF_009685135.1
Assembly Coverage 149


Biosample

Curated Collection Information
Accession 9103952

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Ireland
Original Query Type name
Coordinates (Lat/Lon) 52.87/-7.98
Address Ireland

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Staphylococcal Infection
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

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NZ_CP073902.1 See Comparison
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CP052982.1 See Comparison
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CP052960.1 See Comparison
CP052956.1 See Comparison
NZ_CP073879.1 See Comparison
NZ_CP073864.1 See Comparison
NZ_LR736240.1 See Comparison
CP052982.1 See Comparison
CP053089.1 See Comparison
CP052960.1 See Comparison
CP052956.1 See Comparison
NZ_CP073884.1 See Comparison
NZ_CP073860.1 See Comparison
NZ_CP073861.1 See Comparison
NZ_CP073846.1 See Comparison
NZ_CP073853.1 See Comparison
NZ_CP073886.1 See Comparison
NZ_CP073822.1 See Comparison
NZ_CP073831.1 See Comparison
NZ_CP073837.1 See Comparison
NZ_CP073843.1 See Comparison
NZ_CP073825.1 See Comparison
NZ_CP073868.1 See Comparison
NZ_CP073849.1 See Comparison
NZ_CP073848.1 See Comparison
NZ_CP073866.1 See Comparison
NZ_CP073896.1 See Comparison
NZ_CP073839.1 See Comparison
NZ_CP073875.1 See Comparison
NZ_CP073871.1 See Comparison
NZ_CP073899.1 See Comparison
NZ_CP073828.1 See Comparison
NZ_CP073833.1 See Comparison
NZ_CP073889.1 See Comparison
NZ_CP073858.1 See Comparison
NZ_CP073903.1 See Comparison
NZ_CP073882.1 See Comparison
NZ_CP073854.1 See Comparison
NZ_CP073892.1 See Comparison
NZ_CP073902.1 See Comparison
NZ_CP073860.1 See Comparison
NZ_CP073864.1 See Comparison
NZ_CP073861.1 See Comparison
NZ_CP073846.1 See Comparison
NZ_CP073853.1 See Comparison
NZ_CP073886.1 See Comparison
NZ_CP073822.1 See Comparison
NZ_CP073831.1 See Comparison
NZ_CP073837.1 See Comparison
NZ_CP073843.1 See Comparison
NZ_CP073825.1 See Comparison
NZ_CP073868.1 See Comparison
NZ_CP073849.1 See Comparison
NZ_CP073848.1 See Comparison
NZ_CP073866.1 See Comparison
NZ_CP073896.1 See Comparison
NZ_CP073839.1 See Comparison
NZ_CP073875.1 See Comparison
NZ_CP073871.1 See Comparison
NZ_CP073899.1 See Comparison
NZ_CP073828.1 See Comparison
NZ_CP073833.1 See Comparison
NZ_CP073889.1 See Comparison
NZ_CP073858.1 See Comparison
NZ_CP073903.1 See Comparison
NZ_CP073882.1 See Comparison
NZ_CP073854.1 See Comparison
NZ_CP073892.1 See Comparison
NZ_CP073902.1 See Comparison
CP052982.1 See Comparison
NZ_CP073884.1 See Comparison
NZ_LR736240.1 See Comparison
NZ_CP045647.1 See Comparison
CP053089.1 See Comparison
CP052960.1 See Comparison
CP052956.1 See Comparison
NZ_CP073879.1 See Comparison
NZ_CP073864.1 See Comparison
NZ_LR736240.1 See Comparison
NZ_CP073884.1 See Comparison
NZ_CP073860.1 See Comparison
NZ_CP073861.1 See Comparison
NZ_CP073846.1 See Comparison
NZ_CP073853.1 See Comparison
NZ_CP073886.1 See Comparison
NZ_CP073822.1 See Comparison
NZ_CP073831.1 See Comparison
NZ_CP073837.1 See Comparison
NZ_CP073843.1 See Comparison
NZ_CP073825.1 See Comparison
NZ_CP073868.1 See Comparison
NZ_CP073849.1 See Comparison
NZ_CP073848.1 See Comparison
NZ_CP073866.1 See Comparison
NZ_CP073896.1 See Comparison
NZ_CP073839.1 See Comparison
NZ_CP073875.1 See Comparison
NZ_CP073871.1 See Comparison
NZ_CP073899.1 See Comparison
NZ_CP073828.1 See Comparison
NZ_CP073833.1 See Comparison
NZ_CP073889.1 See Comparison
NZ_CP073858.1 See Comparison
NZ_CP073903.1 See Comparison
NZ_CP073882.1 See Comparison
NZ_CP073854.1 See Comparison
NZ_CP073892.1 See Comparison
NZ_CP073902.1 See Comparison
NZ_CP073864.1 See Comparison
NZ_CP073884.1 See Comparison
NZ_CP073860.1 See Comparison
NZ_CP073861.1 See Comparison
NZ_CP073846.1 See Comparison
NZ_CP073853.1 See Comparison
NZ_CP073886.1 See Comparison
NZ_CP073822.1 See Comparison
NZ_CP073831.1 See Comparison
NZ_CP073837.1 See Comparison
NZ_CP073843.1 See Comparison
NZ_CP073825.1 See Comparison
NZ_CP073868.1 See Comparison
NZ_CP073849.1 See Comparison
NZ_CP073848.1 See Comparison
NZ_CP073866.1 See Comparison
NZ_CP073896.1 See Comparison
NZ_CP073839.1 See Comparison
NZ_CP073875.1 See Comparison
NZ_CP073871.1 See Comparison
NZ_CP073899.1 See Comparison
NZ_CP073828.1 See Comparison
NZ_CP073833.1 See Comparison
NZ_CP073889.1 See Comparison
NZ_CP073858.1 See Comparison
NZ_CP073903.1 See Comparison
NZ_CP073882.1 See Comparison
NZ_CP073854.1 See Comparison
NZ_CP073892.1 See Comparison
NZ_CP073902.1 See Comparison
NZ_LR736240.1 See Comparison
CP052982.1 See Comparison
CP053089.1 See Comparison
CP052960.1 See Comparison
CP052956.1 See Comparison
NZ_CP073879.1 See Comparison
NZ_CP073864.1 See Comparison
NZ_CP073884.1 See Comparison
NZ_CP073860.1 See Comparison
NZ_CP073861.1 See Comparison
NZ_CP073846.1 See Comparison
NZ_CP073853.1 See Comparison
NZ_CP073886.1 See Comparison
NZ_CP073822.1 See Comparison
NZ_CP073831.1 See Comparison
NZ_CP073837.1 See Comparison
NZ_CP073843.1 See Comparison
NZ_CP073825.1 See Comparison
NZ_CP073868.1 See Comparison
NZ_CP073849.1 See Comparison
NZ_CP073848.1 See Comparison
NZ_CP073866.1 See Comparison
NZ_CP073896.1 See Comparison
NZ_CP073839.1 See Comparison
NZ_CP073875.1 See Comparison
NZ_CP073871.1 See Comparison
NZ_CP073899.1 See Comparison
NZ_CP073828.1 See Comparison
NZ_CP073833.1 See Comparison
NZ_CP073889.1 See Comparison
NZ_CP073858.1 See Comparison
NZ_CP073903.1 See Comparison
NZ_CP073882.1 See Comparison
NZ_CP073854.1 See Comparison
NZ_CP073892.1 See Comparison
NZ_CP073902.1 See Comparison
CP052982.1 See Comparison
CP053089.1 See Comparison
CP052960.1 See Comparison
CP052956.1 See Comparison
NZ_CP073864.1 See Comparison
NZ_CP073884.1 See Comparison
NZ_CP073860.1 See Comparison
NZ_CP073861.1 See Comparison
NZ_CP073846.1 See Comparison
NZ_CP073853.1 See Comparison
NZ_CP073886.1 See Comparison
NZ_CP073822.1 See Comparison
NZ_CP073831.1 See Comparison
NZ_CP073837.1 See Comparison
NZ_CP073843.1 See Comparison
NZ_CP073825.1 See Comparison
NZ_CP073868.1 See Comparison
NZ_CP073849.1 See Comparison
NZ_CP073848.1 See Comparison
NZ_CP073866.1 See Comparison
NZ_CP073896.1 See Comparison
NZ_CP073839.1 See Comparison
NZ_CP073875.1 See Comparison
NZ_CP073871.1 See Comparison
NZ_CP073899.1 See Comparison
NZ_CP073828.1 See Comparison
NZ_CP073833.1 See Comparison
NZ_CP073889.1 See Comparison
NZ_CP073858.1 See Comparison
NZ_CP073903.1 See Comparison
NZ_CP073882.1 See Comparison
NZ_CP073854.1 See Comparison
NZ_CP073892.1 See Comparison
NZ_CP073902.1 See Comparison
CP052982.1 See Comparison
CP053089.1 See Comparison
CP052960.1 See Comparison
CP052956.1 See Comparison
NZ_CP073879.1 See Comparison
NZ_LR736240.1 See Comparison
NZ_CP073879.1 See Comparison
NZ_LR736240.1 See Comparison
CP052982.1 See Comparison
CP053089.1 See Comparison
CP052960.1 See Comparison
CP052956.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2