Plasmid NZ_CP044271.1

Sequence

Nucleotide Information

Accession	NZ_CP044271.1
Description	Enterococcus faecium strain V1836 plasmid pHVH-V1836-7, complete sequence
Source	refseq
Topology	circular
Length	4461 bp
GC Content	0.32 %
Created at NCBI	Oct. 7, 2019

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Enterococcus faecium (1352)

Lineage

Superkingdom	Bacteria (2)
Phylum	Bacillota (1239)
Class	Bacilli (91061)
Order	Lactobacillales (186826)
Family	Enterococcaceae (81852)
Genus	Enterococcus (1350)
Species	Enterococcus_faecium (1352)
Strain

Assembly

Genome Data Information

Accession	GCF_008728455.1
Assembly Coverage	20

Biosample

Curated Collection Information

Accession	12818007

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	55.67N;12.56E
Original Query Type	coordinates
Coordinates (Lat/Lon)	55.67/12.56
Address	15, Halmtorvet, Postbyen, Meatpacking District, Copenhagen, Copenhagen Municipality, Indre By, Capital Region of Denmark, 1700, Denmark

ECOSYSTEM

Original Query	Homo sapiens,Rectum
Classification	gastrointestinal_system,host_associated,rectal
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	Infection
DOID/SYMP	Disease infectious agent (DOID:0050117 ) A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP066388.1	See Comparison
NZ_CP084185.1	See Comparison
NZ_CP085903.1	See Comparison
NZ_CP085915.1	See Comparison
NZ_CP131831.1	See Comparison
NZ_CP044279.1	See Comparison
NZ_LR135362.1	See Comparison
NZ_CP132228.1	See Comparison
NZ_CP131845.1	See Comparison
NZ_CP131822.1	See Comparison
NZ_CP131815.1	See Comparison
NZ_CP131853.1	See Comparison
NZ_CP131806.1	See Comparison
AP031284.1	See Comparison
NZ_CP066388.1	See Comparison
NZ_CP085903.1	See Comparison
NZ_CP085915.1	See Comparison
NZ_CP044271.1	See Comparison
NZ_CP084185.1	See Comparison
NZ_CP044279.1	See Comparison
NZ_CP131831.1	See Comparison
NZ_LR135362.1	See Comparison
NZ_CP132228.1	See Comparison
NZ_CP131845.1	See Comparison
NZ_CP131822.1	See Comparison
NZ_CP131815.1	See Comparison
NZ_CP131853.1	See Comparison
NZ_CP131806.1	See Comparison
AP031284.1	See Comparison
NZ_CP085903.1	See Comparison
NZ_CP066388.1	See Comparison
NZ_CP085915.1	See Comparison
NZ_CP084185.1	See Comparison
NZ_CP084185.1	See Comparison
NZ_LR135362.1	See Comparison
NZ_CP132228.1	See Comparison
NZ_CP131831.1	See Comparison
NZ_CP131845.1	See Comparison
NZ_CP131822.1	See Comparison
NZ_CP131815.1	See Comparison
NZ_CP131853.1	See Comparison
NZ_CP131806.1	See Comparison
AP031284.1	See Comparison
NZ_CP044279.1	See Comparison
NZ_CP066388.1	See Comparison
NZ_CP085903.1	See Comparison
NZ_CP085915.1	See Comparison
NZ_LR135362.1	See Comparison
NZ_CP044279.1	See Comparison
NZ_CP131831.1	See Comparison
NZ_CP132228.1	See Comparison
NZ_CP131845.1	See Comparison
NZ_CP131822.1	See Comparison
NZ_CP131815.1	See Comparison
NZ_CP131853.1	See Comparison
NZ_CP131806.1	See Comparison
AP031284.1	See Comparison
NZ_CP084185.1	See Comparison
NZ_CP085903.1	See Comparison
NZ_CP085915.1	See Comparison
NZ_CP066388.1	See Comparison
NZ_CP085903.1	See Comparison
NZ_CP132228.1	See Comparison
NZ_CP131831.1	See Comparison
NZ_CP131845.1	See Comparison
NZ_CP131822.1	See Comparison
NZ_CP131815.1	See Comparison
NZ_CP131853.1	See Comparison
NZ_CP131806.1	See Comparison
AP031284.1	See Comparison
NZ_CP066388.1	See Comparison
NZ_CP044279.1	See Comparison
NZ_LR135362.1	See Comparison
NZ_CP085915.1	See Comparison
NZ_CP044279.1	See Comparison
NZ_CP132228.1	See Comparison
NZ_CP131831.1	See Comparison
NZ_CP131845.1	See Comparison
NZ_CP131822.1	See Comparison
NZ_CP131815.1	See Comparison
NZ_CP131853.1	See Comparison
NZ_CP131806.1	See Comparison
NZ_CP084185.1	See Comparison
NZ_LR135362.1	See Comparison
AP031284.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore