Plasmid NZ_CP043289.1

Sequence

Nucleotide Information

Accession NZ_CP043289.1
Description Escherichia coli strain WCHEC025985 plasmid p2_025985, complete sequence
Source refseq
Topology circular
Length 72276 bp
GC Content 0.51 %
Created at NCBI March 15, 2022



Assembly

Genome Data Information

Accession GCF_022559025.1
Assembly Coverage 200


Biosample

Curated Collection Information
Accession 12158048

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Chengdu,Sichuan
Original Query Type name
Coordinates (Lat/Lon) 30.64/104.07
Address China,Chengdu,Sichuan

ECOSYSTEM
Original Query Homo sapiens,pure culture
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP043289.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderpluserm(B)copy
rgiErmBcopy
PGAGrepAcopy
PGAGhypothetical proteincopy
PGAGmolybdopterin-dependent oxidoreductasecopy
PGAGcytochrome b/b6 domain-containing proteincopy
PGAGresponse regulator transcription factorcopy
PGAGATP-binding proteincopy
PGAGIS6-like element IS26 family transposasecopy
PGAG23S rRNA methyltransferase attenuation leader peptidecopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 99 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
relaxaseNC_017627_00068MOBF6086066127plus97.32310003350
oriTKX579977MOBF3050030778plus1001006.71e-144516
mate-pair-formationNC_022651_00077MPF_F3283533143plus99.029996.05e-63212
mate-pair-formationNC_010409_00124MPF_F3372134446plus98.3471002.81e-155484
mate-pair-formationNC_019094_00090MPF_F3444935840plus95.914960811
mate-pair-formationNC_017639_00094MPF_F3676037272plus98.2461005.42e-98316
mate-pair-formationNC_013437_00116MPF_T3892741542plus90.4829901634
mate-pair-formationNC_007675_00027MPF_F4192842557plus99.524977.18e-136427
mate-pair-formationNC_017639_00100MPF_F4255743513plus98.433910604
mate-pair-formationNC_018966_00040MPF_F4394444528plus97.949921.42e-124394
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 15 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2