Plasmid NZ_CP043200.1

Sequence

Nucleotide Information

Accession NZ_CP043200.1
Description Escherichia coli O16:H48 strain PG20180060 plasmid pPG20180060.1-IncI2, complete sequence
Source refseq
Topology circular
Length 64997 bp
GC Content 0.42 %
Created at NCBI Sept. 2, 2019



Assembly

Genome Data Information

Accession GCF_008124285.1
Assembly Coverage 94


Biosample

Curated Collection Information
Accession 12603263

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query mouse gut
Classification gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP069963.1 See Comparison
NC_019115.1 See Comparison
NZ_CP043212.1 See Comparison
NZ_CP069963.1 See Comparison
NZ_CP043212.1 See Comparison
NZ_CP043182.1 See Comparison
NZ_CP043206.1 See Comparison
NZ_CP043194.1 See Comparison
NZ_CP043220.1 See Comparison
NZ_CP043210.1 See Comparison
NZ_CP043202.1 See Comparison
NZ_CP043208.1 See Comparison
NZ_CP043204.1 See Comparison
NZ_CP043198.1 See Comparison
NZ_CP043196.1 See Comparison
NC_019115.1 See Comparison
NZ_CP043182.1 See Comparison
NZ_CP043206.1 See Comparison
NZ_CP043194.1 See Comparison
NZ_CP043220.1 See Comparison
NZ_CP043210.1 See Comparison
NZ_CP043202.1 See Comparison
NZ_CP043208.1 See Comparison
NZ_CP043204.1 See Comparison
NZ_CP043198.1 See Comparison
NZ_CP043196.1 See Comparison
NZ_CP043212.1 See Comparison
NZ_CP069963.1 See Comparison
NC_019115.1 See Comparison
NZ_CP043220.1 See Comparison
NZ_CP043210.1 See Comparison
NZ_CP043202.1 See Comparison
NZ_CP043208.1 See Comparison
NZ_CP043204.1 See Comparison
NZ_CP043198.1 See Comparison
NZ_CP043196.1 See Comparison
NZ_CP043182.1 See Comparison
NZ_CP043206.1 See Comparison
NZ_CP043194.1 See Comparison
NC_019115.1 See Comparison
NZ_CP069963.1 See Comparison
NZ_CP069963.1 See Comparison
NZ_CP043212.1 See Comparison
NZ_CP043182.1 See Comparison
NZ_CP043206.1 See Comparison
NZ_CP043194.1 See Comparison
NZ_CP043220.1 See Comparison
NZ_CP043210.1 See Comparison
NZ_CP043202.1 See Comparison
NZ_CP043208.1 See Comparison
NZ_CP043204.1 See Comparison
NZ_CP043198.1 See Comparison
NZ_CP043196.1 See Comparison
NC_019115.1 See Comparison
NZ_CP043212.1 See Comparison
NZ_CP043182.1 See Comparison
NZ_CP043206.1 See Comparison
NZ_CP043194.1 See Comparison
NZ_CP043220.1 See Comparison
NZ_CP043210.1 See Comparison
NZ_CP043202.1 See Comparison
NZ_CP043208.1 See Comparison
NZ_CP043204.1 See Comparison
NZ_CP043198.1 See Comparison
NZ_CP043196.1 See Comparison
NZ_CP043212.1 See Comparison
NZ_CP043212.1 See Comparison
NZ_CP043200.1 See Comparison
NZ_CP043182.1 See Comparison
NZ_CP043206.1 See Comparison
NZ_CP043194.1 See Comparison
NZ_CP043220.1 See Comparison
NZ_CP043210.1 See Comparison
NZ_CP043202.1 See Comparison
NZ_CP043208.1 See Comparison
NZ_CP043204.1 See Comparison
NZ_CP043198.1 See Comparison
NZ_CP043196.1 See Comparison
NZ_CP069963.1 See Comparison
NC_019115.1 See Comparison
NZ_CP069963.1 See Comparison
NC_019115.1 See Comparison
NZ_CP043182.1 See Comparison
NZ_CP043206.1 See Comparison
NZ_CP043194.1 See Comparison
NZ_CP043220.1 See Comparison
NZ_CP043210.1 See Comparison
NZ_CP043202.1 See Comparison
NZ_CP043208.1 See Comparison
NZ_CP043204.1 See Comparison
NZ_CP043198.1 See Comparison
NZ_CP043196.1 See Comparison


Identical Plasmids

100% Sequence Identity



Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2