Plasmid NZ_CP042897.1

Sequence

Nucleotide Information

Accession NZ_CP042897.1
Description Escherichia coli strain CFSAN061771 plasmid pCFSAN061771_01, complete sequence
Source refseq
Topology circular
Length 167754 bp
GC Content 0.50 %
Created at NCBI Aug. 14, 2019



Assembly

Genome Data Information

Accession GCF_003400045.2
Assembly Coverage 500


Biosample

Curated Collection Information
Accession 6909729

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Egypt
Original Query Type name
Coordinates (Lat/Lon) 26.25/29.27
Address Egypt

ECOSYSTEM
Original Query food,raw milk cheese
Classification fermented,food
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_AP025658.1 See Comparison
NZ_MZ367886.1 See Comparison
NZ_CP083513.1 See Comparison
CP073292.1 See Comparison
NZ_CP022166.1 See Comparison
NZ_CP104032.1 See Comparison
NZ_AP027571.1 See Comparison
NZ_CP049102.1 See Comparison
NZ_CP061188.1 See Comparison
NZ_CP083513.1 See Comparison
NZ_CP101728.1 See Comparison
NZ_AP025663.1 See Comparison
NZ_AP025658.1 See Comparison
NZ_MZ367886.1 See Comparison
NZ_CP042897.1 See Comparison
NZ_CP022166.1 See Comparison
CP073292.1 See Comparison
NZ_AP027571.1 See Comparison
NZ_AP025663.1 See Comparison
NZ_CP049102.1 See Comparison
NZ_CP061188.1 See Comparison
NZ_CP104032.1 See Comparison
NZ_CP101728.1 See Comparison
NZ_CP022166.1 See Comparison
NZ_MZ367886.1 See Comparison
NZ_AP025658.1 See Comparison
NZ_CP083513.1 See Comparison
CP073292.1 See Comparison
NZ_AP027571.1 See Comparison
NZ_CP104032.1 See Comparison
NZ_CP049102.1 See Comparison
NZ_CP061188.1 See Comparison
NZ_CP101728.1 See Comparison
NZ_AP025663.1 See Comparison
NZ_CP083513.1 See Comparison
NZ_AP025658.1 See Comparison
NZ_MZ367886.1 See Comparison
NZ_CP022166.1 See Comparison
CP073292.1 See Comparison
NZ_CP104032.1 See Comparison
NZ_CP061188.1 See Comparison
NZ_AP027571.1 See Comparison
NZ_CP049102.1 See Comparison
NZ_CP101728.1 See Comparison
NZ_AP025658.1 See Comparison
NZ_AP025663.1 See Comparison
NZ_MZ367886.1 See Comparison
NZ_CP083513.1 See Comparison
NZ_CP061188.1 See Comparison
CP073292.1 See Comparison
NZ_CP022166.1 See Comparison
NZ_AP027571.1 See Comparison
NZ_CP049102.1 See Comparison
NZ_AP025663.1 See Comparison
NZ_CP104032.1 See Comparison
NZ_CP101728.1 See Comparison
NZ_AP025658.1 See Comparison
CP073292.1 See Comparison
NZ_MZ367886.1 See Comparison
NZ_CP083513.1 See Comparison
NZ_CP101728.1 See Comparison
NZ_CP049102.1 See Comparison
NZ_CP061188.1 See Comparison
NZ_CP022166.1 See Comparison
NZ_AP027571.1 See Comparison
NZ_CP104032.1 See Comparison
NZ_AP025658.1 See Comparison
NZ_AP025663.1 See Comparison
NZ_MZ367886.1 See Comparison
NZ_CP022166.1 See Comparison
NZ_CP083513.1 See Comparison
CP073292.1 See Comparison
NZ_CP049102.1 See Comparison
NZ_CP061188.1 See Comparison
NZ_CP104032.1 See Comparison
NZ_AP025663.1 See Comparison
NZ_AP027571.1 See Comparison
NZ_CP101728.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaTEM-1copy
amrfinderpluscvaBcopy
amrfinderplusaph(6)-Idcopy
amrfinderplussul2copy
amrfinderplustshcopy
amrfinderplusaph(3'')-Ibcopy
amrfinderplusdfrA14copy
amrfinderplusiroDcopy
amrfinderplusiucAcopy
amrfinderplusiucBcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 158 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconAP001918IncFIC2347123967minus95.7921000804
replicon000095__NZ_CP014273_00094IncFIB103846104823minus98.56910001729
repliconKF954760IncFII138046138336plus91.065993.49e-107394
relaxaseNC_017627_00068MOBF1432919596plus97.66510003353
relaxaseNC_021819_00066MOBP9586196562minus81.6241001.28e-125401
mate-pair-formationNC_018966_00040MPF_F107697plus98.477933.38e-127402
mate-pair-formationNC_010488_00021MPF_F6972502plus99.16910001178
mate-pair-formationNC_009837_00049MPF_F69539907plus94.1249901847
mate-pair-formation08-5333_00200MPF_Unknown1146013610plus95.25710001446
mate-pair-formationNC_022651_00077MPF_F158083158391plus100994.03e-63213
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 16 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2