Plasmid NZ_CP042897.1

Sequence

Nucleotide Information

Accession NZ_CP042897.1
Description Escherichia coli strain CFSAN061771 plasmid pCFSAN061771_01, complete sequence
Source refseq
Topology circular
Length 167754 bp
GC Content 0.50 %
Created at NCBI Aug. 14, 2019



Assembly

Genome Data Information

Accession GCF_003400045.2
Assembly Coverage 500


Biosample

Curated Collection Information
Accession 6909729

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Egypt
Original Query Type name
Coordinates (Lat/Lon) 26.25/29.27
Address Egypt

ECOSYSTEM
Original Query food,raw milk cheese
Classification fermented,food
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP049102.1 See Comparison
NZ_CP061188.1 See Comparison
NZ_CP104032.1 See Comparison
NZ_CP101728.1 See Comparison
NZ_CP022166.1 See Comparison
NZ_AP025663.1 See Comparison
NZ_MZ367886.1 See Comparison
NZ_CP083513.1 See Comparison
NZ_AP025658.1 See Comparison
CP073292.1 See Comparison
NZ_CP101728.1 See Comparison
NZ_AP027571.1 See Comparison
NZ_CP049102.1 See Comparison
NZ_CP061188.1 See Comparison
NZ_CP104032.1 See Comparison
NZ_AP025663.1 See Comparison
NZ_AP025658.1 See Comparison
CP073292.1 See Comparison
NZ_MZ367886.1 See Comparison
NZ_CP083513.1 See Comparison
NZ_CP022166.1 See Comparison
NZ_CP104032.1 See Comparison
NZ_AP027571.1 See Comparison
NZ_CP061188.1 See Comparison
NZ_CP049102.1 See Comparison
NZ_AP025663.1 See Comparison
NZ_CP101728.1 See Comparison
NZ_AP025658.1 See Comparison
NZ_CP083513.1 See Comparison
NZ_MZ367886.1 See Comparison
CP073292.1 See Comparison
NZ_CP101728.1 See Comparison
NZ_CP022166.1 See Comparison
NZ_CP104032.1 See Comparison
NZ_AP027571.1 See Comparison
NZ_CP049102.1 See Comparison
NZ_CP061188.1 See Comparison
NZ_CP022166.1 See Comparison
NZ_AP025663.1 See Comparison
NZ_MZ367886.1 See Comparison
NZ_CP083513.1 See Comparison
NZ_AP025658.1 See Comparison
CP073292.1 See Comparison
NZ_CP049102.1 See Comparison
NZ_AP027571.1 See Comparison
NZ_CP101728.1 See Comparison
NZ_CP104032.1 See Comparison
NZ_CP061188.1 See Comparison
NZ_MZ367886.1 See Comparison
NZ_AP025663.1 See Comparison
NZ_AP025658.1 See Comparison
CP073292.1 See Comparison
NZ_CP083513.1 See Comparison
NZ_CP042897.1 See Comparison
NZ_CP049102.1 See Comparison
NZ_AP027571.1 See Comparison
NZ_CP022166.1 See Comparison
NZ_CP022166.1 See Comparison
NZ_CP061188.1 See Comparison
NZ_CP104032.1 See Comparison
NZ_AP025658.1 See Comparison
NZ_CP083513.1 See Comparison
CP073292.1 See Comparison
NZ_CP101728.1 See Comparison
NZ_AP025663.1 See Comparison
NZ_MZ367886.1 See Comparison
NZ_AP027571.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore