Plasmid NZ_CP042889.1

Sequence

Nucleotide Information

Accession NZ_CP042889.1
Description Escherichia coli O10:H32 strain NMBU-W12E19 plasmid pNMBU-W12E19_05, complete sequence
Source refseq
Topology circular
Length 7939 bp
GC Content 0.42 %
Created at NCBI June 7, 2020



Assembly

Genome Data Information

Accession GCF_013282315.1
Assembly Coverage 34.78


Biosample

Curated Collection Information
Accession 12565117

PLASMID INFORMATION
Genotype ST1286
BIOSAMPLE_pathotype UPEC/EAEC

GEOGRAPHICAL INFORMATION
Original Query 59.667N;10.769E
Original Query Type coordinates
Coordinates (Lat/Lon) 59.67/10.77
Address Universitetstunet, Pentagon, Ås, Viken, 1433, Norway

ECOSYSTEM
Original Query surface water
Classification aquatic
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP023847.1 See Comparison
NZ_CP023830.1 See Comparison
NZ_CP135217.1 See Comparison
NZ_CP142933.1 See Comparison
CP056601.1 See Comparison
CP056266.1 See Comparison
NZ_CP051741.1 See Comparison
NZ_CP048341.1 See Comparison
NZ_CP116080.1 See Comparison
NZ_LR890611.1 See Comparison
NZ_CP063776.1 See Comparison
NZ_CP119126.1 See Comparison
NZ_AP022301.1 See Comparison
NZ_CP103707.1 See Comparison
CP077218.1 See Comparison
NZ_CP142933.1 See Comparison
NZ_CP023847.1 See Comparison
NZ_CP023830.1 See Comparison
NZ_CP135217.1 See Comparison
NZ_CP063776.1 See Comparison
CP056601.1 See Comparison
CP056266.1 See Comparison
NZ_CP051741.1 See Comparison
NZ_CP048341.1 See Comparison
NZ_LR890611.1 See Comparison
NZ_CP119126.1 See Comparison
NZ_AP022301.1 See Comparison
CP077218.1 See Comparison
NZ_CP116080.1 See Comparison
NZ_CP103707.1 See Comparison
CP056601.1 See Comparison
NZ_CP023847.1 See Comparison
NZ_CP023830.1 See Comparison
NZ_CP135217.1 See Comparison
NZ_CP142933.1 See Comparison
CP056266.1 See Comparison
NZ_CP103707.1 See Comparison
NZ_CP051741.1 See Comparison
NZ_CP048341.1 See Comparison
NZ_LR890611.1 See Comparison
NZ_CP063776.1 See Comparison
NZ_CP119126.1 See Comparison
NZ_AP022301.1 See Comparison
NZ_CP116080.1 See Comparison
NZ_AP022301.1 See Comparison
NZ_CP142933.1 See Comparison
NZ_CP051741.1 See Comparison
NZ_CP048341.1 See Comparison
NZ_LR890611.1 See Comparison
NZ_CP063776.1 See Comparison
CP077218.1 See Comparison
NZ_CP023847.1 See Comparison
NZ_CP023830.1 See Comparison
NZ_CP135217.1 See Comparison
CP056601.1 See Comparison
CP056266.1 See Comparison
NZ_CP116080.1 See Comparison
NZ_CP119126.1 See Comparison
NZ_CP142933.1 See Comparison
NZ_CP103707.1 See Comparison
CP077218.1 See Comparison
NZ_CP023847.1 See Comparison
NZ_CP023830.1 See Comparison
NZ_CP135217.1 See Comparison
CP056601.1 See Comparison
CP056266.1 See Comparison
NZ_CP042889.1 See Comparison
NZ_LR890611.1 See Comparison
NZ_CP051741.1 See Comparison
NZ_CP048341.1 See Comparison
NZ_CP063776.1 See Comparison
NZ_CP116080.1 See Comparison
NZ_AP022301.1 See Comparison
NZ_CP119126.1 See Comparison
NZ_CP023847.1 See Comparison
NZ_CP103707.1 See Comparison
CP077218.1 See Comparison
NZ_CP023830.1 See Comparison
NZ_CP135217.1 See Comparison
NZ_CP051741.1 See Comparison
NZ_CP142933.1 See Comparison
CP056601.1 See Comparison
CP056266.1 See Comparison
NZ_CP048341.1 See Comparison
NZ_CP063776.1 See Comparison
NZ_LR890611.1 See Comparison
NZ_AP022301.1 See Comparison
NZ_CP116080.1 See Comparison
NZ_CP119126.1 See Comparison
CP077218.1 See Comparison
NZ_CP103707.1 See Comparison
NZ_CP051741.1 See Comparison
NZ_CP023847.1 See Comparison
NZ_CP023830.1 See Comparison
NZ_CP142933.1 See Comparison
CP056266.1 See Comparison
NZ_CP135217.1 See Comparison
CP056601.1 See Comparison
NZ_LR890611.1 See Comparison
NZ_CP048341.1 See Comparison
NZ_AP022301.1 See Comparison
NZ_CP116080.1 See Comparison
CP077218.1 See Comparison
NZ_CP063776.1 See Comparison
NZ_CP119126.1 See Comparison
NZ_CP103707.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2