Plasmid NZ_CP041948.1

Sequence

Nucleotide Information

Accession NZ_CP041948.1
Description Klebsiella pneumoniae strain KP2 plasmid pKP2_2, complete sequence
Source refseq
Topology circular
Length 75307 bp
GC Content 0.52 %
Created at NCBI Dec. 1, 2019



Assembly

Genome Data Information

Accession GCF_009720445.1
Assembly Coverage 448


Biosample

Curated Collection Information
Accession 12307651

PLASMID INFORMATION
Genotype ST16

GEOGRAPHICAL INFORMATION
Original Query 29.712470N;95.397690W
Original Query Type coordinates
Coordinates (Lat/Lon) 29.71/-95.40
Address Fannin Street, Texas Medical Center, Houston, Harris County, Texas, 77030, United States

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query sepsis
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP041948.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusdfrA12copy
amrfinderplusblaNDM-5copy
amrfinderplusblecopy
rgiBRP(MBL)copy
PGAGreplication regulatory protein RepAcopy
PGAGtapcopy
PGAGrepAcopy
PGAGCPBP family intramembrane glutamic endopeptidasecopy
PGAGpemIcopy
PGAGpemKcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 97 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_022651_00077MPF_F4033940647plus99.029994.79e-63212
mate-pair-formationNC_010409_00124MPF_F4122541950plus97.9341006.52e-155483
mate-pair-formationNC_019094_00090MPF_F4195343362plus96.815970857
mate-pair-formationNC_017639_00094MPF_F4426444776plus98.2461005.42e-98316
mate-pair-formationNC_013437_00116MPF_T4641249027plus91.5149901648
mate-pair-formationNC_007675_00027MPF_F4941350042plus99.048973.79e-135424
mate-pair-formationNC_017639_00100MPF_F5004250998plus98.7461000605
mate-pair-formationNC_018966_00040MPF_F5142952013plus97.949924.29e-124393
mate-pair-formationNC_019094_00068MPF_F5201353860plus94.48110001144
mate-pair-formationNC_008460_00107MPF_F5818361002plus97.3410001785
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 14 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2