Plasmid NZ_CP041363.1

Sequence

Nucleotide Information

Accession NZ_CP041363.1
Description Citrobacter amalonaticus strain 133355-SW-C4-Cam plasmid p133355_SW_C4_Cam-1, complete sequence
Source refseq
Topology circular
Length 81724 bp
GC Content 0.53 %
Created at NCBI July 17, 2019



Assembly

Genome Data Information

Accession GCF_006965505.1
Assembly Coverage 40


Biosample

Curated Collection Information
Accession 11653541

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Switzerland,Bern
Original Query Type name
Coordinates (Lat/Lon) 46.95/7.45
Address Switzerland,Bern

ECOSYSTEM
Original Query Homo sapiens,stools
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_AP024499.1 See Comparison
NZ_AP022300.1 See Comparison
NZ_CP061363.1 See Comparison
NZ_CP145649.1 See Comparison
NZ_CP129753.1 See Comparison
NZ_CP039513.2 See Comparison
NZ_CP058590.1 See Comparison
NZ_CP151315.1 See Comparison
NZ_CP061363.1 See Comparison
NZ_AP022300.1 See Comparison
NZ_MK048477.1 See Comparison
NZ_AP024499.1 See Comparison
NZ_CP041363.1 See Comparison
NZ_CP058590.1 See Comparison
NZ_CP039513.2 See Comparison
NZ_CP145649.1 See Comparison
NZ_CP151315.1 See Comparison
NZ_CP129753.1 See Comparison
NZ_MK048477.1 See Comparison
NZ_AP022300.1 See Comparison
NZ_AP024499.1 See Comparison
NZ_CP061363.1 See Comparison
NZ_CP151315.1 See Comparison
NZ_CP039513.2 See Comparison
NZ_CP058590.1 See Comparison
NZ_CP129753.1 See Comparison
NZ_MK048477.1 See Comparison
NZ_CP145649.1 See Comparison
NZ_AP022300.1 See Comparison
NZ_AP024499.1 See Comparison
NZ_CP061363.1 See Comparison
NZ_CP058590.1 See Comparison
NZ_CP039513.2 See Comparison
NZ_CP145649.1 See Comparison
NZ_CP129753.1 See Comparison
NZ_CP151315.1 See Comparison
NZ_MK048477.1 See Comparison
NZ_CP039513.2 See Comparison
NZ_AP024499.1 See Comparison
NZ_AP022300.1 See Comparison
NZ_CP061363.1 See Comparison
NZ_CP058590.1 See Comparison
NZ_CP145649.1 See Comparison
NZ_CP129753.1 See Comparison
NZ_CP151315.1 See Comparison
NZ_MK048477.1 See Comparison
NZ_CP039513.2 See Comparison
NZ_AP022300.1 See Comparison
NZ_CP061363.1 See Comparison
NZ_AP024499.1 See Comparison
NZ_MK048477.1 See Comparison
NZ_CP129753.1 See Comparison
NZ_CP145649.1 See Comparison
NZ_CP058590.1 See Comparison
NZ_CP151315.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore