Plasmid NZ_CP040716.1
Sequence
Nucleotide Information
Accession | NZ_CP040716.1 |
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Description | Klebsiella pneumoniae strain 16HN-35 plasmid p16HN-35_5, complete sequence |
Source | refseq |
Topology | circular |
Length | 5596 bp |
GC Content | 0.51 % |
Created at NCBI | June 25, 2023 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Klebsiella pneumoniae (573) |
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Lineage
Superkingdom | Bacteria (2) |
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Phylum | Pseudomonadota (1224) |
Class | Gammaproteobacteria (1236) |
Order | Enterobacterales (91347) |
Family | Enterobacteriaceae (543) |
Genus | Klebsiella (570) |
Species | Klebsiella_pneumoniae (573) |
Strain |
Biosample
Curated Collection Information
Accession | 11867826 |
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PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query | China |
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Original Query Type | name |
Coordinates (Lat/Lon) | 34.41/86.03 |
Address | China |
ECOSYSTEM
Original Query | whole organism,sputum |
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Classification | host_associated,respiratory_system |
Host-associated Taxon |
DISEASE
Original Query | None |
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DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
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B
Source | Element Name | Display | Sequence | Favorite |
---|---|---|---|---|
PGAG | MbeB family mobilization protein | copy | ||
PGAG | MbeD family mobilization/exclusion protein | copy | ||
PGAG | DUF6290 family protein | copy | ||
PGAG | type II toxin-antitoxin system RelE/ParE family toxin | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | MobC family plasmid mobilization relaxosome protein | copy | ||
PGAG | hypothetical protein | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 14 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
oriT | NZ_CP008718 | MOBP | 3865 | 3945 | plus | 90.361 | 97 | 1.1100000000000001e-21 | 108 |
relaxase | NC_009794_00003 | MOBP | 3 | 467 | plus | 100 | 99 | 4.25e-73 | 259 |
relaxase | NC_009794_00003 | MOBP | 4531 | 5595 | plus | 99.718 | 99 | 0 | 716 |
replicon | EU580135_00003 | rep_cluster_2370 | 3282 | 3680 | minus | 89.526 | 91 | 3.03e-139 | 501 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 4 of 4 entries
Detected typing markers by plasmidfinder
NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
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NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |